Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1549 ATGTTTGTTGAGTATAATGCCATTATTAAAAATGGAACATGGTCATTGGTTCCTTTGCCTTCTGATCGGAAAATCGTCGACTGTAAATGGGTGTTTCGCCTCAAACTCAAACCAAATGGTGACATTGATCGCTATAAGGCACGGCTAGTTGCTCAGGGCTATTCTCAAGCTTTTGGGATAGATTATTTTGAAATGTTTTGTCCAGTGGTTAAACCAGCAACTATCAAGATTGTTTTATCATTAGTCGTTACAAATGGTTGGTTCATTCGTCAGCCTGATGTGCATAATGCCTTCTTACATGGTGATTTGAAAGAAGAGGTTGTTCGGACTAGTACAGGGTTTCACTTGTCTCAACGTAAATATATCAGTGACCTTGTCTCTCGGGTGAATTTGAGTTCTTGTAAACCAGTGGCTTCTCCTATGTCTGTTGGTCCCCCGATTTCTCTGTCTGATGACGATAAAAGAAGTACAAGTGGATTCTGCACCTTCCTCGGATCCAATCTTGTGTCATGGCAATCCTCCAAGCAAAAGATTATATCCCGCTCCAGTGTTGAATCTGAATACAGAGGTATGTCTAACGTCGCTGCTGAAATTTCTTGGGTTCAATTAGTGCTCAAAGAACTTGGGGTATCTACATCTCCTCCATTGTTACTTTGTGATAATAAAAAGGTAGCTCGCAAGCAACTCATTGTTCGTTTTGTTCCCTCTGAAGATCAACTAGCGGATATCATGACAAAGGGCCTTCCTTCTCCACTGTTCATTAGTCTTCGCACCAAGCTAACCATTGCGTCTACACTCGGCTGGGCGTGGGCTCTCACCCGAATTCATCTCAATGGGACGCTGCTGATCTTCCCGCTCTCCACTCCAAACGTCGTCGTTCGCTTGCAGTTCTCAAATTTCCCCAAGCGGGTTCTAGCAGTTAGTCTGTCCTTAGTCAACACCGTTGAATGCACCATGGGTGTTTCAGGAAAATGGTTCAAAGCGTTAGTTGGTTCCAAGAAATCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGTGAGGACAGCCAGTAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTTAATTCGAATTTTGCCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGATCCAGAAGCTGCTTCTATTCCTTCTGATTCACTTCAAACATGTGATGCATTGCATAATCAACAGAATGATGTAGAAGAACTGGCTGCTATATGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTGGTTAGACTTCAAGCTCTTGTCAGGGGTCATGCTGTCAGAAAACAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTCCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAATTTCAACAACAACTTGAAAATCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTTGGGTCTGTTGAAGAAATTCAAGCAAAATTATTAAAAAGGCAGGAGGCTGCTGCTAAGCGTGAGAGAGCCATGGCATATGCTTTGGCTCACCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCCGTTCGTCCATGGGAAAACCGCTTTCTTGATATTAATCTTAGAGATGGAGTGATGATTCGTGAGAATGGATCAGCTGAGGGCAAAAGTAACACTAAACCTCATTCAAAAAGTGCTGGCAAGAAAACAAACTTAGTGACTGATCAATCAAACCTCTCAAGCCAAAAAACTGCTGCCTCGCATTCTGATGGATATGGTTCATCATCACCCACTAAGTCACCTGGCACTGTAGAGGTATCCAGTGCACAGATTCAAAAGCCCAAGTATAAACCTGAGAGGCCATTTGAAGAAGTCAAACCTAAAGTAGATACTGGTTTGAGATCCCATAGCAATCCAAAAGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGATTATCCATGCCTAATAATGTTGCAGATCCTGGTAGTCAAAATCAAACAGTGAGAAATTCCAGCAGAACTCCTGGCAAAGCGACCGTGACCAAGTCCATCAACGACAAACCCAAGTCGATTTCAAGAGGCGATGCAAAGTCTGCAAAACCCAGATTGCAGAATTGA 2262 43.28 MFVEYNAIIKNGTWSLVPLPSDRKIVDCKWVFRLKLKPNGDIDRYKARLVAQGYSQAFGIDYFEMFCPVVKPATIKIVLSLVVTNGWFIRQPDVHNAFLHGDLKEEVVRTSTGFHLSQRKYISDLVSRVNLSSCKPVASPMSVGPPISLSDDDKRSTSGFCTFLGSNLVSWQSSKQKIISRSSVESEYRGMSNVAAEISWVQLVLKELGVSTSPPLLLCDNKKVARKQLIVRFVPSEDQLADIMTKGLPSPLFISLRTKLTIASTLGWAWALTRIHLNGTLLIFPLSTPNVVVRLQFSNFPKRVLAVSLSLVNTVECTMGVSGKWFKALVGSKKSEKSQSSEHDENVRTASNKFWHRRKHSVDIDADKLQHEFNSNFAPFVEESNALSDPEAASIPSDSLQTCDALHNQQNDVEELAAICIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKFQQQLENQARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSAEGKSNTKPHSKSAGKKTNLVTDQSNLSSQKTAASHSDGYGSSSPTKSPGTVEVSSAQIQKPKYKPERPFEEVKPKVDTGLRSHSNPKERSTPLVKNAKKRLSMPNNVADPGSQNQTVRNSSRTPGKATVTKSINDKPKSISRGDAKSAKPRLQN 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14563680 14576003 - Lag0035077.1 Lac3g1549 601971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1549 753 MobiDBLite consensus disorder prediction 598 656 - -
Lac3g1549 753 MobiDBLite consensus disorder prediction 705 735 - -
Lac3g1549 753 Gene3D - 414 456 - -
Lac3g1549 753 SUPERFAMILY DNA/RNA polymerases 10 209 IPR043502 -
Lac3g1549 753 PANTHER IQ-DOMAIN 5-RELATED 323 714 - -
Lac3g1549 753 MobiDBLite consensus disorder prediction 597 753 - -
Lac3g1549 753 Pfam IQ calmodulin-binding motif 417 435 IPR000048 GO:0005515(InterPro)
Lac3g1549 753 MobiDBLite consensus disorder prediction 662 683 - -
Lac3g1549 753 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 11 107 IPR013103 -
Lac3g1549 753 SMART iq_5 436 457 IPR000048 GO:0005515(InterPro)
Lac3g1549 753 SMART iq_5 413 435 IPR000048 GO:0005515(InterPro)
Lac3g1549 753 ProSiteProfiles IQ motif profile. 414 442 - -
Lac3g1549 753 ProSiteProfiles IQ motif profile. 438 465 - -
Lac3g1549 753 CDD RNase_HI_RT_Ty1 152 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1549 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3038 Lac-Chr10:44910783 Lac3g1549 Lac-Chr3:14563680 1.40E-24 dispersed
Lac1g2108 Lac-Chr1:42564758 Lac3g1549 Lac-Chr3:14563680 3.20E-26 dispersed
Lac2g0466 Lac-Chr2:3405215 Lac3g1549 Lac-Chr3:14563680 4.60E-42 dispersed
Lac3g1549 Lac-Chr3:14563680 Lac9g2776 Lac-Chr9:45897161 1.70E-65 dispersed
Lac4g2992 Lac-Chr4:48162938 Lac3g1549 Lac-Chr3:14563680 1.00E-24 dispersed
Lac8g2087 Lac-Chr8:39343750 Lac3g1549 Lac-Chr3:14563680 1.50E-19 dispersed
Lac5g2434 Lac-Chr5:42959095 Lac3g1549 Lac-Chr3:14563680 1.90E-27 transposed
Lac11g1788 Lac-Chr11:32331816 Lac3g1549 Lac-Chr3:14563680 6.20E-47 wgd
Lac2g2795 Lac-Chr2:43614589 Lac3g1549 Lac-Chr3:14563680 2.20E-28 wgd
Lac3g1549 Lac-Chr3:14563680 Lac6g2264 Lac-Chr6:39696042 1.40E-30 wgd
Lac3g1549 Lac-Chr3:14563680 Lac7g2356 Lac-Chr7:39962904 1.50E-16 wgd
Lac3g1549 Lac-Chr3:14563680 Lac7g2061 Lac-Chr7:33503419 3.80E-10 wgd
Lac3g1549 Lac-Chr3:14563680 Lac9g0238 Lac-Chr9:3764892 5.50E-27 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g2437 . 1 479 IQD Protein Family AT3G52290 54.6 1.4e-104 377.5
Lac3g1549 . 319 712 IQD Protein Family AT3G22190 58.3 1.4e-93 340.9
Lac2g0466 . 1 437 IQD Protein Family AT2G26180 59.5 7.0e-117 418.3
Lac1g3383 . 77 355 IQD Protein Family AT2G33990 52.3 1.5e-64 243.8
Lac5g2434 . 36 223 IQD Protein Family AT2G33990 57.1 1.7e-52 203.8
Lac5g2434 . 21 230 IQD Protein Family AT3G15050 56.6 2.8e-55 213.0
Lac8g2087 . 128 472 IQD Protein Family AT5G13460 52.4 4.2e-75 279.6
Lac7g0055 . 1 506 IQD Protein Family AT4G00820 55.1 3.9e-128 456.1
Lac12g1344 . 98 501 IQD Protein Family AT4G00820 56.8 1.0e-104 378.3
Lac7g0055 . 1 506 IQD Protein Family AT1G01110 52.4 4.4e-124 442.6
Lac12g1344 . 98 501 IQD Protein Family AT1G01110 53.0 3.4e-100 363.2
Lac4g2932 . 1 395 IQD Protein Family AT3G16490 52.3 1.0e-72 271.6
Lac3g0966 . 1 395 IQD Protein Family AT3G16490 51.8 8.7e-69 258.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42