Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1549 ATGTTTGTTGAGTATAATGCCATTATTAAAAATGGAACATGGTCATTGGTTCCTTTGCCTTCTGATCGGAAAATCGTCGACTGTAAATGGGTGTTTCGCCTCAAACTCAAACCAAATGGTGACATTGATCGCTATAAGGCACGGCTAGTTGCTCAGGGCTATTCTCAAGCTTTTGGGATAGATTATTTTGAAATGTTTTGTCCAGTGGTTAAACCAGCAACTATCAAGATTGTTTTATCATTAGTCGTTACAAATGGTTGGTTCATTCGTCAGCCTGATGTGCATAATGCCTTCTTACATGGTGATTTGAAAGAAGAGGTTGTTCGGACTAGTACAGGGTTTCACTTGTCTCAACGTAAATATATCAGTGACCTTGTCTCTCGGGTGAATTTGAGTTCTTGTAAACCAGTGGCTTCTCCTATGTCTGTTGGTCCCCCGATTTCTCTGTCTGATGACGATAAAAGAAGTACAAGTGGATTCTGCACCTTCCTCGGATCCAATCTTGTGTCATGGCAATCCTCCAAGCAAAAGATTATATCCCGCTCCAGTGTTGAATCTGAATACAGAGGTATGTCTAACGTCGCTGCTGAAATTTCTTGGGTTCAATTAGTGCTCAAAGAACTTGGGGTATCTACATCTCCTCCATTGTTACTTTGTGATAATAAAAAGGTAGCTCGCAAGCAACTCATTGTTCGTTTTGTTCCCTCTGAAGATCAACTAGCGGATATCATGACAAAGGGCCTTCCTTCTCCACTGTTCATTAGTCTTCGCACCAAGCTAACCATTGCGTCTACACTCGGCTGGGCGTGGGCTCTCACCCGAATTCATCTCAATGGGACGCTGCTGATCTTCCCGCTCTCCACTCCAAACGTCGTCGTTCGCTTGCAGTTCTCAAATTTCCCCAAGCGGGTTCTAGCAGTTAGTCTGTCCTTAGTCAACACCGTTGAATGCACCATGGGTGTTTCAGGAAAATGGTTCAAAGCGTTAGTTGGTTCCAAGAAATCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGTGAGGACAGCCAGTAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTTAATTCGAATTTTGCCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGATCCAGAAGCTGCTTCTATTCCTTCTGATTCACTTCAAACATGTGATGCATTGCATAATCAACAGAATGATGTAGAAGAACTGGCTGCTATATGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTGGTTAGACTTCAAGCTCTTGTCAGGGGTCATGCTGTCAGAAAACAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTCCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAATTTCAACAACAACTTGAAAATCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTTGGGTCTGTTGAAGAAATTCAAGCAAAATTATTAAAAAGGCAGGAGGCTGCTGCTAAGCGTGAGAGAGCCATGGCATATGCTTTGGCTCACCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCCGTTCGTCCATGGGAAAACCGCTTTCTTGATATTAATCTTAGAGATGGAGTGATGATTCGTGAGAATGGATCAGCTGAGGGCAAAAGTAACACTAAACCTCATTCAAAAAGTGCTGGCAAGAAAACAAACTTAGTGACTGATCAATCAAACCTCTCAAGCCAAAAAACTGCTGCCTCGCATTCTGATGGATATGGTTCATCATCACCCACTAAGTCACCTGGCACTGTAGAGGTATCCAGTGCACAGATTCAAAAGCCCAAGTATAAACCTGAGAGGCCATTTGAAGAAGTCAAACCTAAAGTAGATACTGGTTTGAGATCCCATAGCAATCCAAAAGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGATTATCCATGCCTAATAATGTTGCAGATCCTGGTAGTCAAAATCAAACAGTGAGAAATTCCAGCAGAACTCCTGGCAAAGCGACCGTGACCAAGTCCATCAACGACAAACCCAAGTCGATTTCAAGAGGCGATGCAAAGTCTGCAAAACCCAGATTGCAGAATTGA 2262 43.28 MFVEYNAIIKNGTWSLVPLPSDRKIVDCKWVFRLKLKPNGDIDRYKARLVAQGYSQAFGIDYFEMFCPVVKPATIKIVLSLVVTNGWFIRQPDVHNAFLHGDLKEEVVRTSTGFHLSQRKYISDLVSRVNLSSCKPVASPMSVGPPISLSDDDKRSTSGFCTFLGSNLVSWQSSKQKIISRSSVESEYRGMSNVAAEISWVQLVLKELGVSTSPPLLLCDNKKVARKQLIVRFVPSEDQLADIMTKGLPSPLFISLRTKLTIASTLGWAWALTRIHLNGTLLIFPLSTPNVVVRLQFSNFPKRVLAVSLSLVNTVECTMGVSGKWFKALVGSKKSEKSQSSEHDENVRTASNKFWHRRKHSVDIDADKLQHEFNSNFAPFVEESNALSDPEAASIPSDSLQTCDALHNQQNDVEELAAICIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKFQQQLENQARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSAEGKSNTKPHSKSAGKKTNLVTDQSNLSSQKTAASHSDGYGSSSPTKSPGTVEVSSAQIQKPKYKPERPFEEVKPKVDTGLRSHSNPKERSTPLVKNAKKRLSMPNNVADPGSQNQTVRNSSRTPGKATVTKSINDKPKSISRGDAKSAKPRLQN 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14563680 14576003 - Lag0035077.1 Lac3g1549 601971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1549 753 MobiDBLite consensus disorder prediction 598 656 - -
Lac3g1549 753 MobiDBLite consensus disorder prediction 705 735 - -
Lac3g1549 753 Gene3D - 414 456 - -
Lac3g1549 753 SUPERFAMILY DNA/RNA polymerases 10 209 IPR043502 -
Lac3g1549 753 PANTHER IQ-DOMAIN 5-RELATED 323 714 - -
Lac3g1549 753 MobiDBLite consensus disorder prediction 597 753 - -
Lac3g1549 753 Pfam IQ calmodulin-binding motif 417 435 IPR000048 GO:0005515(InterPro)
Lac3g1549 753 MobiDBLite consensus disorder prediction 662 683 - -
Lac3g1549 753 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 11 107 IPR013103 -
Lac3g1549 753 SMART iq_5 436 457 IPR000048 GO:0005515(InterPro)
Lac3g1549 753 SMART iq_5 413 435 IPR000048 GO:0005515(InterPro)
Lac3g1549 753 ProSiteProfiles IQ motif profile. 414 442 - -
Lac3g1549 753 ProSiteProfiles IQ motif profile. 438 465 - -
Lac3g1549 753 CDD RNase_HI_RT_Ty1 152 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3038 Lac-Chr10:44910783 Lac3g1549 Lac-Chr3:14563680 1.40E-24 dispersed
Lac1g2108 Lac-Chr1:42564758 Lac3g1549 Lac-Chr3:14563680 3.20E-26 dispersed
Lac2g0466 Lac-Chr2:3405215 Lac3g1549 Lac-Chr3:14563680 4.60E-42 dispersed
Lac3g1549 Lac-Chr3:14563680 Lac9g2776 Lac-Chr9:45897161 1.70E-65 dispersed
Lac4g2992 Lac-Chr4:48162938 Lac3g1549 Lac-Chr3:14563680 1.00E-24 dispersed
Lac8g2087 Lac-Chr8:39343750 Lac3g1549 Lac-Chr3:14563680 1.50E-19 dispersed
Lac5g2434 Lac-Chr5:42959095 Lac3g1549 Lac-Chr3:14563680 1.90E-27 transposed
Lac11g1788 Lac-Chr11:32331816 Lac3g1549 Lac-Chr3:14563680 6.20E-47 wgd
Lac2g2795 Lac-Chr2:43614589 Lac3g1549 Lac-Chr3:14563680 2.20E-28 wgd
Lac3g1549 Lac-Chr3:14563680 Lac6g2264 Lac-Chr6:39696042 1.40E-30 wgd
Lac3g1549 Lac-Chr3:14563680 Lac7g2356 Lac-Chr7:39962904 1.50E-16 wgd
Lac3g1549 Lac-Chr3:14563680 Lac7g2061 Lac-Chr7:33503419 3.80E-10 wgd
Lac3g1549 Lac-Chr3:14563680 Lac9g0238 Lac-Chr9:3764892 5.50E-27 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1549 - - - 0.0