Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1690 ATGCAAGGAGCTAACAAGGACAACCGGGTGGAGATAGGACCAAGAAGCTACCCAAAGGAAGACCAACCAACGGGTCGAGCCATGGTCCGCCAAGCGGGCCGAGTTCGTTTGCCTTCGCTCGGTCCCGCTGCCTCTAGTCGTCCCGGTCCAGCCTGGGGACCCGAACTCTCTACTCTCTCCTCTTACTCTCTAGCTCTCCTCCTTCCACTTTCTGACTTAAGCATCGGAGGCGGTGTGGCTAGCACCACACCGATTCCCATTCGGCCATTCCCTTCCGATTCTCTGCAATTTTTCTGCTCTTCAATCCATTCCCAATTCTCCGTAATGAGGCTCCAAGTGAACGAAGACGATGTCGACGATGTTCTTGTTCCTCCTCCTAACTTCTCCATGGTCGAGGATGGTATTTTCCGTTCCGGATTCCCTCAGCCCCCCAATTTCCCCTTCCTCAAGAACCTCAATCTCCGCTCCATCATATATTTGTGTCCTGAACCCTACCCAGATGAGAATTTGGAGTTTCTTAGAGCCAATAACATCAGGCTTTTTCAGTTCAAAATTGAAGGGAAGAAGGAGCCTTTCGATTCGATTCCGAAGGATGCTATCCTTGAGGCCCTAAAAATCCTAATTGATGTTAGGAATCACCCCATTTTGATCCACTGCAAGCGTGGGAAGCATCGAACGGGCTCACTCGTCGGTTGCCTGAGGAAGTTTCAGAACTGGTGCTTGACTTCCGTGTTCGAGGAGTACCAGCGATTCGCAGGCTTGAAGTCTAGGACGACAGATCTACAATTCATCGAGAGGTTCGACGTTATGTCTCTGAGGCAATGTGTTTACAGCATCATATACCAGTACCAAGGTTACAGCTCAAGCAAGAGGAGGCTGGTGTATGGAGAAGAAAAGTTGCAGAAGCCCCAAACAACATCAGTTTAG 927 50.05 MQGANKDNRVEIGPRSYPKEDQPTGRAMVRQAGRVRLPSLGPAASSRPGPAWGPELSTLSSYSLALLLPLSDLSIGGGVASTTPIPIRPFPSDSLQFFCSSIHSQFSVMRLQVNEDDVDDVLVPPPNFSMVEDGIFRSGFPQPPNFPFLKNLNLRSIIYLCPEPYPDENLEFLRANNIRLFQFKIEGKKEPFDSIPKDAILEALKILIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLTSVFEEYQRFAGLKSRTTDLQFIERFDVMSLRQCVYSIIYQYQGYSSSKRRLVYGEEKLQKPQTTSV 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16788545 16793589 - Lag0035218.1 Lac3g1690 602112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1690 308 Gene3D Protein tyrosine phosphatase superfamily 121 271 IPR029021 -
Lac3g1690 308 PRINTS Plant and fungal dual specificity phosphatase signature 122 139 IPR020428 GO:0016791(InterPro)
Lac3g1690 308 PRINTS Plant and fungal dual specificity phosphatase signature 159 172 IPR020428 GO:0016791(InterPro)
Lac3g1690 308 PRINTS Plant and fungal dual specificity phosphatase signature 178 192 IPR020428 GO:0016791(InterPro)
Lac3g1690 308 PRINTS Plant and fungal dual specificity phosphatase signature 195 209 IPR020428 GO:0016791(InterPro)
Lac3g1690 308 Pfam Tyrosine phosphatase family 122 270 IPR004861 -
Lac3g1690 308 MobiDBLite consensus disorder prediction 1 33 - -
Lac3g1690 308 CDD PFA-DSP_Siw14 122 268 - -
Lac3g1690 308 ProSiteProfiles Dual specificity protein phosphatase domain profile. 127 282 IPR020422 GO:0006470(InterPro)
Lac3g1690 308 PANTHER TYROSINE-PROTEIN PHOSPHATASE 103 293 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Lac3g1690 308 ProSitePatterns Tyrosine specific protein phosphatases active site. 217 227 IPR016130 GO:0016311(InterPro)
Lac3g1690 308 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 122 268 IPR029021 -
Lac3g1690 308 FunFam probable tyrosine-protein phosphatase At1g05000 121 271 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0819 Lac-Chr12:8491638 Lac3g1690 Lac-Chr3:16788545 1.20E-55 dispersed
Lac3g1690 Lac-Chr3:16788545 Lac9g2220 Lac-Chr9:41611281 4.50E-60 dispersed
Lac1g0813 Lac-Chr1:20665292 Lac3g1690 Lac-Chr3:16788545 3.50E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1690 K18045 - csv:101211082 343.969