Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1690 ATGCAAGGAGCTAACAAGGACAACCGGGTGGAGATAGGACCAAGAAGCTACCCAAAGGAAGACCAACCAACGGGTCGAGCCATGGTCCGCCAAGCGGGCCGAGTTCGTTTGCCTTCGCTCGGTCCCGCTGCCTCTAGTCGTCCCGGTCCAGCCTGGGGACCCGAACTCTCTACTCTCTCCTCTTACTCTCTAGCTCTCCTCCTTCCACTTTCTGACTTAAGCATCGGAGGCGGTGTGGCTAGCACCACACCGATTCCCATTCGGCCATTCCCTTCCGATTCTCTGCAATTTTTCTGCTCTTCAATCCATTCCCAATTCTCCGTAATGAGGCTCCAAGTGAACGAAGACGATGTCGACGATGTTCTTGTTCCTCCTCCTAACTTCTCCATGGTCGAGGATGGTATTTTCCGTTCCGGATTCCCTCAGCCCCCCAATTTCCCCTTCCTCAAGAACCTCAATCTCCGCTCCATCATATATTTGTGTCCTGAACCCTACCCAGATGAGAATTTGGAGTTTCTTAGAGCCAATAACATCAGGCTTTTTCAGTTCAAAATTGAAGGGAAGAAGGAGCCTTTCGATTCGATTCCGAAGGATGCTATCCTTGAGGCCCTAAAAATCCTAATTGATGTTAGGAATCACCCCATTTTGATCCACTGCAAGCGTGGGAAGCATCGAACGGGCTCACTCGTCGGTTGCCTGAGGAAGTTTCAGAACTGGTGCTTGACTTCCGTGTTCGAGGAGTACCAGCGATTCGCAGGCTTGAAGTCTAGGACGACAGATCTACAATTCATCGAGAGGTTCGACGTTATGTCTCTGAGGCAATGTGTTTACAGCATCATATACCAGTACCAAGGTTACAGCTCAAGCAAGAGGAGGCTGGTGTATGGAGAAGAAAAGTTGCAGAAGCCCCAAACAACATCAGTTTAG 927 50.05 MQGANKDNRVEIGPRSYPKEDQPTGRAMVRQAGRVRLPSLGPAASSRPGPAWGPELSTLSSYSLALLLPLSDLSIGGGVASTTPIPIRPFPSDSLQFFCSSIHSQFSVMRLQVNEDDVDDVLVPPPNFSMVEDGIFRSGFPQPPNFPFLKNLNLRSIIYLCPEPYPDENLEFLRANNIRLFQFKIEGKKEPFDSIPKDAILEALKILIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLTSVFEEYQRFAGLKSRTTDLQFIERFDVMSLRQCVYSIIYQYQGYSSSKRRLVYGEEKLQKPQTTSV 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16788545 16793589 - Lag0035218.1 Lac3g1690 602112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1690 308 Gene3D Protein tyrosine phosphatase superfamily 121 271 IPR029021 -
Lac3g1690 308 PRINTS Plant and fungal dual specificity phosphatase signature 122 139 IPR020428 GO:0016791(InterPro)
Lac3g1690 308 PRINTS Plant and fungal dual specificity phosphatase signature 159 172 IPR020428 GO:0016791(InterPro)
Lac3g1690 308 PRINTS Plant and fungal dual specificity phosphatase signature 178 192 IPR020428 GO:0016791(InterPro)
Lac3g1690 308 PRINTS Plant and fungal dual specificity phosphatase signature 195 209 IPR020428 GO:0016791(InterPro)
Lac3g1690 308 Pfam Tyrosine phosphatase family 122 270 IPR004861 -
Lac3g1690 308 MobiDBLite consensus disorder prediction 1 33 - -
Lac3g1690 308 CDD PFA-DSP_Siw14 122 268 - -
Lac3g1690 308 ProSiteProfiles Dual specificity protein phosphatase domain profile. 127 282 IPR020422 GO:0006470(InterPro)
Lac3g1690 308 PANTHER TYROSINE-PROTEIN PHOSPHATASE 103 293 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Lac3g1690 308 ProSitePatterns Tyrosine specific protein phosphatases active site. 217 227 IPR016130 GO:0016311(InterPro)
Lac3g1690 308 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 122 268 IPR029021 -
Lac3g1690 308 FunFam probable tyrosine-protein phosphatase At1g05000 121 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1690 K18045 - - csv:101211082 343.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0819 Lac-Chr12:8491638 Lac3g1690 Lac-Chr3:16788545 1.20E-55 dispersed
Lac3g1690 Lac-Chr3:16788545 Lac9g2220 Lac-Chr9:41611281 4.50E-60 dispersed
Lac1g0813 Lac-Chr1:20665292 Lac3g1690 Lac-Chr3:16788545 3.50E-12 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac2g2055 . 84 237 Protein tyrosine phosphatase (PTP) family AT1G71860 56.8 4.2e-43 172.9
Lac3g0027 . 1 760 Protein tyrosine phosphatase (PTP) family AT5G23720 66.4 8.1e-275 944.1
Lac12g2326 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 9.3e-44 174.1
Lac12g0829 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 5.1e-72 268.1
Lac13g0651 . 140 324 Protein tyrosine phosphatase (PTP) family AT3G52180 75.7 8.6e-82 301.2
Lac13g1219 . 33 282 Protein tyrosine phosphatase (PTP) family AT3G10940 71.5 4.5e-107 385.2
Lac8g0287 . 29 477 Protein tyrosine phosphatase (PTP) family AT3G01510 73.3 1.6e-204 709.5
Lac9g2220 . 9 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.2e-74 277.3
Lac12g0819 . 33 241 Protein tyrosine phosphatase (PTP) family AT2G32960 63.4 6.6e-73 271.6
Lac5g0369 . 1 332 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 7.7e-98 354.8
Lac6g3049 . 12 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 2.5e-80 296.6
Lac6g3049 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.1e-45 180.6
Lac9g2220 . 18 212 Protein tyrosine phosphatase (PTP) family AT4G03960 70.8 4.4e-77 285.0
Lac12g0819 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.1e-70 263.8
Lac3g1690 . 120 291 Protein tyrosine phosphatase (PTP) family AT4G03960 57.0 1.3e-55 213.8
Lac3g1690 . 115 304 Protein tyrosine phosphatase (PTP) family AT3G02800 70.0 6.3e-79 291.2
Lac9g2220 . 34 206 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 9.9e-56 214.2
Lac12g0819 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 5.6e-51 198.4
Lac13g0933 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.4e-62 238.8
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac12g0225 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 5.1e-217 751.5
Lac1g2600 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.7 1.6e-202 703.4
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac9g2686 . 17 246 Protein tyrosine phosphatase (PTP) family AT3G44620 56.3 3.7e-71 265.8
Lac5g0274 . 23 309 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 3.7e-107 385.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008556 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35