Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1698 ATGGAGTACGATTCTGGAATTCCGATGTCTGTGACGGAGGGGCACTCCTCTGCCCTTACGCCATCTTTGCGCGAAGATGCACTGTGGCAAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCTGTGCGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGAGCAACATGTAGATTTAATCATCCGCCTAATAGAGAGCTGGCTATTGCCACCGCAAGAATGAAGGGGGAGTTCCCAGAAAGAATTGGACAGCCAGAATGTCAGTACTACCTGAAGACAGGAACTTGCAAGTTTGGGGCTACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTGCGCCCGAGTGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGTGGTTCTCCTATTTATCCAACCGTACAATCACCAACTCCTGGTCAGCAGTCATATCCAGGAGGAAGCACAAATTGGTCAAGGGCTTCCTTTATTCCCAGTCCACGATGGCAAGGCCCTTCCAGTTATGCATCTTTAATTTTACCTCAGGGAGTTCTCTCTGTTCCAGGCTGGAATGCATTCAACGATCAGCTAGGATCAGTTTCATCCTCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAATTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCCGTTTGTCGGTTTCATCATCCCAGAGAAAGAGTAATTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCCTCCCATTACGCCCGGGAGAACCTTTGTGCATCTTTTATTCTCGTTATGGGATCTGTAAGTTCGGCCCGAGCTGCAAGTTTGATCATCCTATGGGAATCTTCACATACAATCTCTCTGCAGCGTCATCGGCCAATGCCCCAGTTCAGCATTTGTTCGGGACATCTTCAGGAACAACTGCACTGAACTTGTCATCTGAAGGGTTAGTTGAAGCAGGATCTGCAAAGCCGAGGCGACTATCGCTCTCGGAGAGTCGAGAGATGCCATCTGACGATGAAAATATCGACGCCGAGGGCTGA 1197 46.95 MEYDSGIPMSVTEGHSSALTPSLREDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPSETECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNAFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSANAPVQHLFGTSSGTTALNLSSEGLVEAGSAKPRRLSLSESREMPSDDENIDAEG 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17058112 17069774 + Lag0035226.1 Lac3g1698 602120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1698 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 331 IPR000571 GO:0046872(InterPro)
Lac3g1698 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872(InterPro)
Lac3g1698 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872(InterPro)
Lac3g1698 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 285 IPR000571 GO:0046872(InterPro)
Lac3g1698 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 74 IPR000571 GO:0046872(InterPro)
Lac3g1698 398 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872(InterPro)
Lac3g1698 398 PANTHER PROTEIN PHOSPHATASE RELATED 37 332 IPR050974 GO:0003729(PANTHER)
Lac3g1698 398 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872(InterPro)
Lac3g1698 398 SUPERFAMILY CCCH zinc finger 52 75 IPR036855 GO:0046872(InterPro)
Lac3g1698 398 Gene3D - 247 333 - -
Lac3g1698 398 Gene3D - 47 125 - -
Lac3g1698 398 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872(InterPro)
Lac3g1698 398 MobiDBLite consensus disorder prediction 369 398 - -
Lac3g1698 398 Gene3D - 126 174 - -
Lac3g1698 398 SUPERFAMILY CCCH zinc finger 262 287 IPR036855 GO:0046872(InterPro)
Lac3g1698 398 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872(InterPro)
Lac3g1698 398 FunFam CCCH type zinc finger protein 256 341 - -
Lac3g1698 398 FunFam Zinc finger nuclease 2 46 123 - -
Lac3g1698 398 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872(InterPro)
Lac3g1698 398 ProSiteProfiles Zinc finger C3H1-type profile. 258 286 IPR000571 GO:0046872(InterPro)
Lac3g1698 398 SMART c3hfinal6 92 119 IPR000571 GO:0046872(InterPro)
Lac3g1698 398 SMART c3hfinal6 304 331 IPR000571 GO:0046872(InterPro)
Lac3g1698 398 SMART c3hfinal6 47 74 IPR000571 GO:0046872(InterPro)
Lac3g1698 398 SMART c3hfinal6 258 285 IPR000571 GO:0046872(InterPro)
Lac3g1698 398 SMART c3hfinal6 138 165 IPR000571 GO:0046872(InterPro)
Lac3g1698 398 MobiDBLite consensus disorder prediction 239 255 - -
Lac3g1698 398 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872(InterPro)
Lac3g1698 398 SUPERFAMILY CCCH zinc finger 307 331 IPR036855 GO:0046872(InterPro)
Lac3g1698 398 MobiDBLite consensus disorder prediction 239 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0537 Lac-Chr10:4178558 Lac3g1698 Lac-Chr3:17058112 5.70E-22 dispersed
Lac12g0023 Lac-Chr12:335335 Lac3g1698 Lac-Chr3:17058112 1.40E-13 dispersed
Lac3g1698 Lac-Chr3:17058112 Lac7g0858 Lac-Chr7:6974025 1.80E-24 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23648 PF00642 zf-CCCH 2.70E-10 CL0537 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1698 - - - 0.0