Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1761 ATGCTCCCTAACAATACTGTTGTTGCAATCAAAAAGTCAAAGCAAATCGAGACAAATCGGACTGAACAGTTCATTAATGAAGTTATTATCCTCTCTCAAATTAACCACAGAAATATTGTAAGGCTTTTGGGTTGTTGCTTAGAAACTGAGTTTCCTTTACTAGTTTATGAATTTGTTTCTAATGGGACGCTTTCGCACCATATTCACAAGGAAGATTCAGGAGAATCACCTTCTCTATCATGGGAAAATCGCCTTAGAATTGCTTCTGAAGTTTCGGGAGCTATATCTTACATGCATTCTACAGCTTCAATTCCTATATATCACAGAGACATCAAGTCTTTAAACATACTCTTGGATGACAACTATAGTGCAAAAGTTTCCGATTTTGGAACATCGAGATTTGTGTCATGTGATCAATCACATTTGACTACAAAAGTGTTGGGAACTTTTGGATATATAGATCCTGAATACTTTAGGTCAAGTCAATACACCGAAAAAAGTGACGTATATAGCTTTGGAGTCTTGATGGTAGAGCTTTTAACTGGGAAGCTACCGGTCACTTTTGCAAATAAAAATGAAGGCGGGAATCTGTTAGACTACTTCATTTCATTAGAAAGGGCTAATCAGCTCACTGAAATTCTAGATAGTACAGTAGCCACGGAAGAAAAGATGGAAGTTGTTAACCATGTTGCGACACTTGCTACAAAATGCTTAAGATCAAATGGAAAAGAGAGACCAACAATGAAACAAGTATATTTGGAACTTGAAGGATTGAGAAAGTCTCAAGATTGTTCAAGAATTAGTGAAGAAGTTCAATCAATTCAAACATCTTCATCGTTCTCTCTAGAGGTTGGAGAGGATGAGCTTACAGATGATAGCATCATCATATCATTTGAGACTATCACTACATAG 912 36.4 MLPNNTVVAIKKSKQIETNRTEQFINEVIILSQINHRNIVRLLGCCLETEFPLLVYEFVSNGTLSHHIHKEDSGESPSLSWENRLRIASEVSGAISYMHSTASIPIYHRDIKSLNILLDDNYSAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPEYFRSSQYTEKSDVYSFGVLMVELLTGKLPVTFANKNEGGNLLDYFISLERANQLTEILDSTVATEEKMEVVNHVATLATKCLRSNGKERPTMKQVYLELEGLRKSQDCSRISEEVQSIQTSSSFSLEVGEDELTDDSIIISFETITT 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18102033 18102944 - Lag0035289.1 Lac3g1761 602183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1761 303 PIRSF ILK 4 270 - -
Lac3g1761 303 Gene3D Phosphorylase Kinase; domain 1 1 58 - -
Lac3g1761 303 SUPERFAMILY Protein kinase-like (PK-like) 4 255 IPR011009 -
Lac3g1761 303 ProSitePatterns Serine/Threonine protein kinases active-site signature. 106 118 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g1761 303 Pfam Protein kinase domain 4 251 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1761 303 SMART serkin_6 1 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1761 303 FunFam Wall-associated receptor kinase 2 59 278 - -
Lac3g1761 303 Gene3D Transferase(Phosphotransferase) domain 1 59 281 - -
Lac3g1761 303 FunFam Wall-associated receptor kinase-like 10 1 58 - -
Lac3g1761 303 ProSiteProfiles Protein kinase domain profile. 1 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1761 303 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 262 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1761 Lac-Chr3:18102033 Lac3g1790 Lac-Chr3:18757467 6.00E-134 dispersed
Lac7g1170 Lac-Chr7:10796586 Lac3g1761 Lac-Chr3:18102033 2.70E-57 transposed
Lac12g0877 Lac-Chr12:9089906 Lac3g1761 Lac-Chr3:18102033 6.00E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86093 PF00069 Pkinase 2.70E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1761 - - - 0.0