Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1784 ATGGAGGCTTCTTCTCCTTGCTATGCTTTTTCTCTCATCATCTTCCTTTTCTTCTTCCCTCGAGAATCCATCTGCCAGCCTACATATGTCGGAAATGGAAGCTGTTCTATCAATGATACTTCAACGCCAAAAGAGTATCTTTGCGTTGATTCTATTATTGACTCATGTGATTCATATTATCTAACCTTCAAATCTCCACCTCATTCTTATTACTTTTCTTACACCAATATCACATTAGGAAACAATATTTTGTTTAGCACTTACATTTATCCTTGTAAATGTTTGGGTGGTTCTTTTCAGAATTTACACTCTTATACTATTGAGAGTGGTGATAGTTATGAGAAAATAGTAAACGACTATTTTCAAGGGCTGACGAGCTGCTCGGCCCTAAGAACTCAAAACCATGACTTTGCTATCAATAGTTCTTCTTCCACAGGTAGACAAATTGTAGTTCCTTTGCGATGTGCTTGTCCAACCAAAGCTCAACAAGCAAATGGAACTGAGTCTTTGGCTATGTATGTGCTACAACCCAATCAAACAATTGGATCTGTTGCGAGGGACTTTAGGGTTGACAAAGAATTCGTCTTGAAAGCAAACAACCTTTCCAACTCAACCCACGCCTACCCTTTCATGCTTATTTTGGTTCCCTTGGGCAAATATGATATTTGCAGAATATTTGGTTGTGACTCTAAGTGGCGGATCCAAAACATGATGCTAGGGGTGGACAACTTTATATTGGAAGAACTCGAACAAGCAACGGATAATTATAGTCAAAGTAGGTTTCTTGGTCAAGGAGGATTTGGCACGGTTTACAAAGGGATACTTTGTGACAACACCCTCGTTGCAATCAAAAGGTCCAAACAAATTGAGGAAAATTGGATCGAACAATTCATTAATGAAGTTATCGTCCTCTCTCAAATTAACCACAGAAATATTGTTAGACTTCTGGGTTGTTGTTTGGAAACTGAGTTCCCTTTGCTAGTCTATGAATTTGTTTCTAACGGGACGCTTTCACACCATATTCACAGGGAAGATCCTCAAGAATCACCTTCTCTTTCTTGGGAAAATCGTCTCAATATTGCTTCTGAAGTTGCAGGAGCTATATCTTACATGCATTCTGCAGCTTCAATTCCTATTTTTCACAGAGATATTAAGTCTTTAAATATTCTTTTGGACGATAATTTTAGTGCAAAGGTTTCTGATTTTGGAACATCAAGATTTGTTTCTTGCGATCAATCTCATTTGACCACAAAAGTGTTGGGAACTTTTGGGTATATAGATCCTGAGTACTTCAGATCAAGTCAGTACACTGAAAAGAGTGATGTATATAGCTTCGGAGTCTTGTTGGTGGAGCTTTTAACAAGGAAGCAACCTGTCACTTTTCCCAAAAATGGTGGTGGGAATCTATTGGACTACTTCATTTCACTGGAAATGACTAATCGACTTGTTGAAATTCTAGATGTTACAGTTGCAAAGGAAGAAATGAGGGAGGTGGTGAACAATGTCGCGATACTTGCCATAAAATGTTTAAGATCAAATGGGAGAGAAAGGCCTACAATGAAACAAGTATATTTGGAATTGGAAGGATTGAGAAGGCCTCAAGATTGTTTAGGAATTGCTGAAGAAAGTCATTCAAGAACTTTTTCATTGCACTCATTCGAGAGTAGTGACGACGAGCTTCTAAGATAA 1689 38.19 MEASSPCYAFSLIIFLFFFPRESICQPTYVGNGSCSINDTSTPKEYLCVDSIIDSCDSYYLTFKSPPHSYYFSYTNITLGNNILFSTYIYPCKCLGGSFQNLHSYTIESGDSYEKIVNDYFQGLTSCSALRTQNHDFAINSSSSTGRQIVVPLRCACPTKAQQANGTESLAMYVLQPNQTIGSVARDFRVDKEFVLKANNLSNSTHAYPFMLILVPLGKYDICRIFGCDSKWRIQNMMLGVDNFILEELEQATDNYSQSRFLGQGGFGTVYKGILCDNTLVAIKRSKQIEENWIEQFINEVIVLSQINHRNIVRLLGCCLETEFPLLVYEFVSNGTLSHHIHREDPQESPSLSWENRLNIASEVAGAISYMHSAASIPIFHRDIKSLNILLDDNFSAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPEYFRSSQYTEKSDVYSFGVLLVELLTRKQPVTFPKNGGGNLLDYFISLEMTNRLVEILDVTVAKEEMREVVNNVAILAIKCLRSNGRERPTMKQVYLELEGLRRPQDCLGIAEESHSRTFSLHSFESSDDELLR 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18603321 18606189 + Lag0035312.1 Lac3g1784 602206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1784 562 FunFam Wall-associated receptor kinase 2 332 549 - -
Lac3g1784 562 SMART serkin_6 256 530 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1784 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g1784 562 FunFam Wall-associated receptor kinase 2 228 331 - -
Lac3g1784 562 Gene3D Phosphorylase Kinase; domain 1 228 331 - -
Lac3g1784 562 Pfam Protein kinase domain 256 523 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1784 562 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 140 535 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lac3g1784 562 Pfam LysM domain 173 216 IPR018392 -
Lac3g1784 562 ProSiteProfiles Protein kinase domain profile. 256 530 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1784 562 Gene3D Transferase(Phosphotransferase) domain 1 332 546 - -
Lac3g1784 562 SUPERFAMILY Protein kinase-like (PK-like) 237 527 IPR011009 -
Lac3g1784 562 CDD STKc_IRAK 262 530 - -
Lac3g1784 562 ProSitePatterns Protein kinases ATP-binding region signature. 262 284 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1784 Lac-Chr3:18603321 Lac3g1790 Lac-Chr3:18757467 1.40E-208 dispersed
Lac3g1784 Lac-Chr3:18603321 Lac3g1785 Lac-Chr3:18634793 1.30E-179 tandem
Lac3g1762 Lac-Chr3:18105723 Lac3g1784 Lac-Chr3:18603321 1.20E-58 transposed
Lac3g1784 Lac-Chr3:18603321 Lac4g0157 Lac-Chr4:2834852 3.20E-57 wgd
Lac3g1784 Lac-Chr3:18603321 Lac4g0282 Lac-Chr4:6114443 3.90E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86095 PF00069 Pkinase 1.40E-50 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1784 - - - 0.0