Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1785 ATGAACTTGAACTATTCCATCGGTGATTCTTCTTCGATAGGCAAAAGACTCCAAGTTCCGTTGCGATGTGCTTGTCCTACGGAAGCTCAGAGAGCTAATGGGATTGCCTCCTTGGGTGTGTATATAATACAACCAAATGAGAGCATTGAATCCATTGCAAGGGATTTTGGGGTTGAGGAAGAAAGCATTTTGGGAGCAAACATGCTTGACAATTCAACCCACATCTACCCATTTACGCCTCTTTTGCTTCCCTTCGACCAAAATAAGACTTGCAGCATACTCCAACTCAGACCTCTTGACTTCGACATAGATTTCTCACTCAACTGCACTTACAACAGGCCGAACTCTTTTAGAAGCCCACGTCTTGACGGCCTCATCATGATTGTAATAGGTGGTTCAATGGTATTAGTATGTTGTTGTTTCTTTTGTGGATGCTATGGACAACAACTAGTTACCAAGAAAAGAAGACGCAAACTTGGTAAGAAAAAGTTTTTCAAGCAAAATGGTGGCCACTTATTGCAGGAAAAACTACTCGAAGAAAGTGAGAGAGTAAAAATATTTACGCAGGAAGAATTGGAACAAGCAACGGATAACTATAATCAAAGTAGGTTTCTTGGACAAGGAGGGTTTGGCACAGTTTACAAAGGGATACTCAATGACAACACCGTTGTTGCAATCAAAAGATCCAAGCAAATCGAAACAAATTGGATCGAACAATTCATCAATGAAGTTATTGTCCTCTCTCAAATTAACCACAGAAATATTGTTAAACTTCAAGGTTGTTGTTTAGAAACTGAGTTCCCTTTGCTGGTTTATGAATTTGTTTCTAACGGGACGCTTTCACACCATATTCACAAGGAAGATCCTGAAGAATCACCTTCTCTTTCTTGGGAAAATCGTCTCAATATCGCTTCTGAAGTTGCAGGAGCTATATCTTACATGCATTCGGCAGCTTCAATTCCTATTTTCCACAGAGATATCAAGTCTTTAAACATACTTTTGGATGATAATTATTGTGCAAAAGTTTCTGATTTTGGAACATCAAGATTTGTGTCGTGTGATCAATCTCATTTGACTACAAAAGTGTTGGGAACTTTTGGATATATAGATCCTGAGTACTTCAGATCAAGTCAGTACACTGAAAAGAGTGATGTATATAGCTTTGGAGTCTTGATGGTTGAGCTTTTAACGGGGAAACTACCGTTCACTTTTGCCAAAAATGATGGTGAAAATCTATTAGAATACTTCATTTTATTGGAAAGGACTAACCAACTTGTTGAAATTCTAGATGTTACAGTTGCCAAGGAGGAAATGATGGAGGTTGTCAAGAACTTTGCAACAGTTGCCATAAAGTGTTTAAGATCAAATGGAAAAGAAAGGCCTACAATGAAACAAGTCTATTTGGAACTTGAGGGTTTGAGAAAGTCGCAAAATTATTTAGGAATTGTTGAAGAAAGTCGTTCGAGAACTTTTTCATTGAACTCTTTCGAGATTAGTGATGATGAGCTTCTAAGATGA 1518 38.08 MNLNYSIGDSSSIGKRLQVPLRCACPTEAQRANGIASLGVYIIQPNESIESIARDFGVEEESILGANMLDNSTHIYPFTPLLLPFDQNKTCSILQLRPLDFDIDFSLNCTYNRPNSFRSPRLDGLIMIVIGGSMVLVCCCFFCGCYGQQLVTKKRRRKLGKKKFFKQNGGHLLQEKLLEESERVKIFTQEELEQATDNYNQSRFLGQGGFGTVYKGILNDNTVVAIKRSKQIETNWIEQFINEVIVLSQINHRNIVKLQGCCLETEFPLLVYEFVSNGTLSHHIHKEDPEESPSLSWENRLNIASEVAGAISYMHSAASIPIFHRDIKSLNILLDDNYCAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPEYFRSSQYTEKSDVYSFGVLMVELLTGKLPFTFAKNDGENLLEYFILLERTNQLVEILDVTVAKEEMMEVVKNFATVAIKCLRSNGKERPTMKQVYLELEGLRKSQNYLGIVEESRSRTFSLNSFEISDDELLR 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18634793 18637048 + Lag0035313.1 Lac3g1785 602207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1785 505 Gene3D LysM domain 28 92 IPR036779 -
Lac3g1785 505 ProSitePatterns Protein kinases ATP-binding region signature. 205 227 IPR017441 GO:0005524(InterPro)
Lac3g1785 505 SMART LysM_2 40 84 IPR018392 -
Lac3g1785 505 Coils Coil 178 198 - -
Lac3g1785 505 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 88 476 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lac3g1785 505 Gene3D Transferase(Phosphotransferase) domain 1 275 491 - -
Lac3g1785 505 ProSiteProfiles Protein kinase domain profile. 199 480 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1785 505 Pfam Protein kinase domain 199 466 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1785 505 Gene3D Phosphorylase Kinase; domain 1 172 274 - -
Lac3g1785 505 ProSiteProfiles LysM domain profile. 39 83 IPR018392 -
Lac3g1785 505 SMART serkin_6 199 480 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1785 505 Pfam LysM domain 41 84 IPR018392 -
Lac3g1785 505 SUPERFAMILY Protein kinase-like (PK-like) 182 470 IPR011009 -
Lac3g1785 505 CDD LysM 40 77 IPR018392 -
Lac3g1785 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 322 334 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g1785 505 FunFam Wall-associated receptor kinase 2 172 274 - -
Lac3g1785 505 FunFam Wall-associated receptor kinase 2 275 492 - -
Lac3g1785 505 CDD STKc_IRAK 205 473 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1785 Lac-Chr3:18634793 Lac3g1792 Lac-Chr3:18775165 2.30E-178 dispersed
Lac3g1784 Lac-Chr3:18603321 Lac3g1785 Lac-Chr3:18634793 1.30E-179 tandem
Lac3g1785 Lac-Chr3:18634793 Lac4g0276 Lac-Chr4:6018033 1.80E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86096 PF00069 Pkinase 9.40E-53 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1785 - - - 0.0