Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1790 ATGGAGGCCTCTTATCCTTATGGTGCTCTTTCTCTCATCTTCTTCCTCTTCTTATTTCCTCACCAATCCATATGCCAACAAGCGTATGTGGGAAACAACACCAGCTGCTCTATCAACGATACTTCAACGCCACAAAGATACGTTTGTACTAACTCTACTTCTTCATGCGATTCCTATTTAGTCTTTAGATTCGAACCTCGCTTTGATAACTTACAATTTTCCAATATAACATTAGGGAAGAATAATAATTTTTCCTTCATCAACGTTCCATGTTCATGTTCGAGTCATTTCTATCAATACATGACCTATTACACTATCAAAAGTGGCGATAGTTATGAAAAGATAGCAAATGATATTTTTCAAGGCCTAACGACCTGTTCAGTGTTGAGAAGTCAGAATCATGAGTATGCTATCAATAATAATACTTCTTCGATCGGCCGAAGCCTCGACGTTCCGTTGCGATGTGCTTGCCCATCCAAAGCTCAAGAAGCCAACGGAGTTGTCTCCTTGCTTGTTTATATTATACAAGAAAATCACGAGACTATTGGATCCGTTGCGAGAGATTTTGGGGTTGAGAAAGAAAGCATCTTGGAAGCCAACATGCTTTCGAATTCGAGTCAGATTTATCCCTTCACGCCTATTTTGGTTCCATTGGGAAGAAATGAGACTTGCAGAATCAACAATAATTGCTCTTCTTCTCCCAGTGAGGATCGCGAATCAATTTATCCATACATCTTACTTGCAATAGGTGCTGTAGTAATACTATGCCGAGGACGTCAACTACTGATGAAGAAAATAAAGCACAGGCTTTGCAAGAGAAAGTTTTTCAAGCAAAATGGTGGCGTCTTGCTGAGGCAAAAACTACTTGAAGATAGTGAGAGAGTAAAAGTATTTACAAAGGAAGAACTCGAACGAGCAACAGATAACTTCAATCAAAGTAGATTTCTTGGTCAAGGAGCATACGGCACAGTTTACAAAGGGATGCTCCACGACAGCACCATTGTTGCAATCAAAAGGTCGAAGCAAATCGAGGCAAACTGGATCGAACAATTCATTAACGAAGTTATTATCCTCTCTCAGATCAACCATAGAAATATTGTCAAGCTTCTTGGATGTTGTTTAGAAACCGAGTTTCCTTTGCTAGTTTATGAATTTGTTTCGAACGGAACACTTTCGCACCATATTCACAAGGAAGCTACAAGAGAATCACTTCCTCTTCCATGGGAAACTCGTCTCAAAATCGCTTCAGAAGTTGCAGGAGCTATATCTTACATGCACTCTGCAGCTTCAATTCCTATTTATCATAGAGATATCAAGTCTCTGAACATACTTTTGGATGAGAACTATAGTGCAAAAGTTTCTGATTTCGGAACGTCCAGATTTGTATCATGTGATCAATCTCATTTGACTACTAAAGTTTTGGGAACTTTCGGATACATAGATCCTCAGTACTTCAGATCAAGTCAATACACAGAAAAGAGCGATGTCTATAGCTTTGGAGTTTTAATGGTAGAGCTTTTAACCGGAAAACAACCCGTCACTTTTGCAAAAACCGATGATAGGAGCCTTCTGGACTACTTCATTTCATTGGAAAAGGCTAACGAGCTCGTCGAAATTCTAGATATTACAGTAGCCAAAGAAGAAAGGATGGACGTTGTTAACAACGTTGCAACGCTTGCCACGAAATGCTTGAGACCAATTGGAAAAGACAGGCCGACAATGAAACAAGTATATCTGGAACTAGAAGGATTGAGACAACATGAAGATCATTCAAAAGTTAGTGAAGAAATTGAATCAAATGAAACTTCTTCATCATTCTCTCTAGAGGCTGAGGACGATGAGATTACAGACGATAGCACCATCATATCCATTGAAACTATATAG 1884 39.17 MEASYPYGALSLIFFLFLFPHQSICQQAYVGNNTSCSINDTSTPQRYVCTNSTSSCDSYLVFRFEPRFDNLQFSNITLGKNNNFSFINVPCSCSSHFYQYMTYYTIKSGDSYEKIANDIFQGLTTCSVLRSQNHEYAINNNTSSIGRSLDVPLRCACPSKAQEANGVVSLLVYIIQENHETIGSVARDFGVEKESILEANMLSNSSQIYPFTPILVPLGRNETCRINNNCSSSPSEDRESIYPYILLAIGAVVILCRGRQLLMKKIKHRLCKRKFFKQNGGVLLRQKLLEDSERVKVFTKEELERATDNFNQSRFLGQGAYGTVYKGMLHDSTIVAIKRSKQIEANWIEQFINEVIILSQINHRNIVKLLGCCLETEFPLLVYEFVSNGTLSHHIHKEATRESLPLPWETRLKIASEVAGAISYMHSAASIPIYHRDIKSLNILLDENYSAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPQYFRSSQYTEKSDVYSFGVLMVELLTGKQPVTFAKTDDRSLLDYFISLEKANELVEILDITVAKEERMDVVNNVATLATKCLRPIGKDRPTMKQVYLELEGLRQHEDHSKVSEEIESNETSSSFSLEAEDDEITDDSTIISIETI 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18757467 18759429 - Lag0035318.1 Lac3g1790 602212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1790 627 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 50 591 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lac3g1790 627 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524(InterPro)
Lac3g1790 627 SUPERFAMILY Protein kinase-like (PK-like) 294 582 IPR011009 -
Lac3g1790 627 Gene3D LysM domain 159 232 IPR036779 -
Lac3g1790 627 SMART LysM_2 172 217 IPR018392 -
Lac3g1790 627 SMART LysM_2 103 152 IPR018392 -
Lac3g1790 627 Gene3D Transferase(Phosphotransferase) domain 1 386 609 - -
Lac3g1790 627 ProSiteProfiles LysM domain profile. 171 216 IPR018392 -
Lac3g1790 627 FunFam Wall-associated receptor kinase 2 283 385 - -
Lac3g1790 627 CDD LysM 172 210 IPR018392 -
Lac3g1790 627 FunFam Wall-associated receptor kinase 2 386 604 - -
Lac3g1790 627 Pfam Protein kinase domain 311 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1790 627 ProSiteProfiles LysM domain profile. 102 151 IPR018392 -
Lac3g1790 627 MobiDBLite consensus disorder prediction 589 608 - -
Lac3g1790 627 Pfam LysM domain 104 142 IPR018392 -
Lac3g1790 627 Pfam LysM domain 180 217 IPR018392 -
Lac3g1790 627 ProSiteProfiles Protein kinase domain profile. 310 593 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1790 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g1790 627 Coils Coil 289 309 - -
Lac3g1790 627 CDD STKc_IRAK 316 584 - -
Lac3g1790 627 Gene3D Phosphorylase Kinase; domain 1 284 385 - -
Lac3g1790 627 SMART serkin_6 310 584 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1761 Lac-Chr3:18102033 Lac3g1790 Lac-Chr3:18757467 6.00E-134 dispersed
Lac3g1762 Lac-Chr3:18105723 Lac3g1790 Lac-Chr3:18757467 9.60E-72 dispersed
Lac3g1784 Lac-Chr3:18603321 Lac3g1790 Lac-Chr3:18757467 1.40E-208 dispersed
Lac3g1790 Lac-Chr3:18757467 Lac7g1169 Lac-Chr7:10788598 5.60E-102 dispersed
Lac7g1170 Lac-Chr7:10796586 Lac3g1790 Lac-Chr3:18757467 8.10E-54 dispersed
Lac3g1790 Lac-Chr3:18757467 Lac3g1792 Lac-Chr3:18775165 1.90E-222 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86097 PF00069 Pkinase 9.40E-51 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1790 - - - 0.0