Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1792 ATGGAAGCCTCCTTTGCATCATATTGTTCTGTTTGTTTCATCTTCTTCCTTTCCCTCATATTTCCCCACCAATCTCTCTGCCAACAGCCATATGTTGTTGGAAATGAGACAAGCTGCTCTATCAATGATGCTTCCACTCCACAAAGATACTCTTGCACTGATTCTCCTCACTCATGCTATTCCTTTTTGCTTGTAAGATCCCAGTCTCACAATGCTGGCTTCTACTTCTACAATACACCATTAGGAAACAGAACTTTGTTGAGGAAGGAAGTTTATTGTACATGTGAGGAGGCTTCTTTGTATCAGAGTATCACGGAATACAATATTCGTAGCGGTGATAGTTATGAAAAAATCGCAAATGATGTTTTTCATGGCTTCACGAGCTGTTGGATGTTGACAACTGTGAACTCTAACCGTTCTATTGATGATACTTCTTCGGTAGGCACAAGTAGTACTCTTAAAGTTCCGTTGCGATGCGCTTGTCCTACCTATGCTCAGCAAGCTCATGGGGTTGGGGTTTTGGTTGTGTACATGCCCCAACCAAACGAGACCATTGGATCGATTGCGAGGGATTTTGGGGTTGAGGAAAAATGCATTTTGGAAGCAAACATGCTTGAGAATTCAACCCACATCTTCCCATTTACGCCTCTTTTGGTTCCGTTGGGTGAAAATGAGATCTGCAACATAGACACATCCTCTTACAGTTGTACCATCCCGCTTCTTTCTGATATGCTGAGACCATTTATACTCATTGGCATAGCCACCCTAATTGCAATAGGACATCAACTACTCAACAAGAGAAGAAGACACAAACTTACTAAGAAAAAGTATTTCAAGCAAAATGGTGGCATCTTATTGCAGAAAAAACTACTTGAAGATAATGAGAGAGTAAAAATATTTACTCAAGAAGAGCTTGAACAAGCAACGGATAACTACAGTCAAAGTAGGTTTCTCGGTCAAGGAGGGTATGGCACAGTTTATAAAGGGATACTCCATGACAACACTATTGTTGCAGTCAAAAAGTCAAAGCAAATTGAAGAAACTTGGATTGAACAATTCATCAATGAAGTTATTATTCTCTCTCGAATTAACCACAAAAATATTGTCAGGCTTCTGGGTTGTTGTTTAGAAACTGAGTTTCCTTTGCTAGTCTATGAATTTGTTTCGAATGGGACACTTTCACACCATATTCACAATAAAGATCCGGGAGAATCACTTCCTCTTTCGTGGGAAACTCGTCTCAGAATTGCTTCTGAAGTTGCTGGAGCTATTTCTTACATGCACTCAACAGCTTCAACCCCCATTTTTCATAGAGATATCAAGTCTCTAAACATTCTGTTGGATGATAACTATAGTGCAAAAGTTTCTGATTTTGGAACATCAAGATTTGTCTCATGCGATCAATCTCATTTGACCACGAGAGTGCAAGGAACTTTTGGATACATTGATCCTGAGTACTTTAGATCAAGTCAATACACTGAAAAGAGTGACGTTTATAGCTTTGGAGTCTTAATGGTAGAGCTATTAACTGGGAAGCTACCTTTCACATTTGCAAGAAATGAGGGTAAAAATCTATTAGACTACTTCATTTCATTGGAAAGAGATAACGAGCTTGCTGGAATTTTGGATATTACGCTGGCTGAAGAAGAAAAGATGGAGGCTATTAACTTTGTCGCAAAACTCACCAGCAAATGTTTGAGACCAATTGGGAAAGAGAGGCCTACAATGAAACAAGTATATTTGGAACTAGAAGGATTGAAGAAGACCCAAGATTGTTGGACAATTACTGAAGAAAGCGAATCAATCAGAACTTATTCATTAAACTCTTTAGGGACTACTGATGATGATCTTCCAAGATGA 1860 39.09 MEASFASYCSVCFIFFLSLIFPHQSLCQQPYVVGNETSCSINDASTPQRYSCTDSPHSCYSFLLVRSQSHNAGFYFYNTPLGNRTLLRKEVYCTCEEASLYQSITEYNIRSGDSYEKIANDVFHGFTSCWMLTTVNSNRSIDDTSSVGTSSTLKVPLRCACPTYAQQAHGVGVLVVYMPQPNETIGSIARDFGVEEKCILEANMLENSTHIFPFTPLLVPLGENEICNIDTSSYSCTIPLLSDMLRPFILIGIATLIAIGHQLLNKRRRHKLTKKKYFKQNGGILLQKKLLEDNERVKIFTQEELEQATDNYSQSRFLGQGGYGTVYKGILHDNTIVAVKKSKQIEETWIEQFINEVIILSRINHKNIVRLLGCCLETEFPLLVYEFVSNGTLSHHIHNKDPGESLPLSWETRLRIASEVAGAISYMHSTASTPIFHRDIKSLNILLDDNYSAKVSDFGTSRFVSCDQSHLTTRVQGTFGYIDPEYFRSSQYTEKSDVYSFGVLMVELLTGKLPFTFARNEGKNLLDYFISLERDNELAGILDITLAEEEKMEAINFVAKLTSKCLRPIGKERPTMKQVYLELEGLKKTQDCWTITEESESIRTYSLNSLGTTDDDLPR 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18775165 18778072 + Lag0035320.1 Lac3g1792 602214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1792 619 Pfam LysM domain 180 220 IPR018392 -
Lac3g1792 619 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 95 588 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lac3g1792 619 Gene3D LysM domain 173 228 IPR036779 -
Lac3g1792 619 Coils Coil 291 311 - -
Lac3g1792 619 CDD STKc_IRAK 318 586 - -
Lac3g1792 619 FunFam Wall-associated receptor kinase 2 285 387 - -
Lac3g1792 619 Gene3D Transferase(Phosphotransferase) domain 1 388 608 - -
Lac3g1792 619 ProSiteProfiles LysM domain profile. 175 219 IPR018392 -
Lac3g1792 619 CDD LysM 175 219 IPR018392 -
Lac3g1792 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g1792 619 FunFam Wall-associated receptor kinase 2 388 605 - -
Lac3g1792 619 Pfam Protein kinase domain 312 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1792 619 SMART serkin_6 312 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1792 619 ProSiteProfiles Protein kinase domain profile. 312 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1792 619 Gene3D Phosphorylase Kinase; domain 1 286 387 - -
Lac3g1792 619 SUPERFAMILY Protein kinase-like (PK-like) 297 583 IPR011009 -
Lac3g1792 619 ProSitePatterns Protein kinases ATP-binding region signature. 318 341 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1785 Lac-Chr3:18634793 Lac3g1792 Lac-Chr3:18775165 2.30E-178 dispersed
Lac3g1792 Lac-Chr3:18775165 Lac8g1781 Lac-Chr8:36002301 8.00E-101 dispersed
Lac3g1790 Lac-Chr3:18757467 Lac3g1792 Lac-Chr3:18775165 1.90E-222 proximal
Lac7g1169 Lac-Chr7:10788598 Lac3g1792 Lac-Chr3:18775165 2.70E-85 transposed
Lac3g1792 Lac-Chr3:18775165 Lac3g2607 Lac-Chr3:39996838 3.70E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86098 PF00069 Pkinase 9.20E-52 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1792 - - - 0.0