Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1914 ATGGACGCCACCTGGTTCGATAAGGACGGAGTGGGAGAATCTTCAAGGAGAATCACCGAGTCGGACGCTGCTGAAGTAATCGATTTGATTTTGGGAAAGTTAATGGACCTGACAGAAGTGAAGAATGTAATGGAAGCCATCGTCTCTCTATGTTCGAAAATGGGCATTATTGATTTCATCTTTTGCTCTAGATCGCAAACCACAGTAGCCCACTCCAAATACAACTGTGCCATAGGCCAATTTCTCTTCTTTTTCGAAAATTCGTTTTGCCCAATCATTCGTGTGCATCGGGAAATTGCATGCGGAATCAGCGGTGTTGAATCAACACCCACCAAAGATCAGAGGGTCGAAATTGGATTCGTGAATTGTTCATCATCATCCATCGAGTGCATCGGAACCCATCTTTGCAACTTGCTTTGCGTTGCCCCCATCGCCCCTTCGCATCGGATTTCGTTTCTATTTCAAAGCTTTTTGGCGATTCCTGTATTCGTCTTTGATCTGTGTTCGATCTCTGGGAGTGACTGGAAGAGGGTCGCTTCCGAAGTTATGTCATCATCTTATCCAGTTCTTCGTAAGCCATTTGAAGACAAGTATCCCAAATTGCCTGTTTCTTTTCAGGGTTCCTCACAAAGTGAAGCCATGAGACATCCAATCCCCAGGCAGGCCCCTCCATTAGTTTCTAACAGTGGCACTGTTGGGCATCTGTTTTCATCGTCTTCTGGATTTCGAAACGATTTCCCATTGATGCAACCTTTGTCTCAAGAGAGAAGTGCCCAGATTTCTCCGTTCATTTCTCGGTCTTCTAATGATGAATCGTTGTTGCCTCCGCATGGTTCTTCCCATTCAGAAGTGCAATCCACAATAGTGACTAATAACTTGAATGAAAACAATGCATCTTGGAGTACGGATACACTTCAGGATTTGCTTGATTTTTCTGAGAATGTTCCTGACCAGAATGGTCAAGCGCAAAGCGTGGCTGGTGTCCTAATGCCGGATGACCAAGCTAAGAGGAATGATTGGCCTGATTGGGCTGATCAGTTCATTTCTGTTGATGATGCACTGGAGCCAAATTGGAATGAAATTTTTTCTGATGCTAGTGCAGGAGATCCTAAACCAGAGCGGAAACGGGGGCGGCGACAACGAAGAAGAAGAAAAGGGGATGACAAAAATGGGGGTGGGGGAGGGTTTGTTGAGGAAGAGGAAGATGGGAGGGGTGGGGGGAGAGTTTGTGAGGAAAAGAAAATGAGAAGGGTGGTGGTGGTTGTCAACGATGAAGAAGAAAGCAAAGGTGGCGGCGGTGGCAACCGACGAGAAGGGGAGAGGGAGGGATCGATGGTGCTAAAATCATCATCTGCTGATTTCCACGCTCCACAGAATCAAACGAGTCAAGTTGACTCTGTACTGACAGCAGAGTTTCATTCTGTTTCTAATTCACTCTCAACATCAACAACTCGACCTCGGATGCGATGGACACCAGAGCTTCATGAGGCATTTGTAGAAGCTGTCAATAAACTTGGTGGCAGCGAAAATGCCACTCCTAAGGGTGTCTTAAAGCTCATGAATGTTGAAGGCCTCACCATTTATCATGTGAAAAGCCACCTACAGAAATATAGAACCGCCAGATATAAACCAGAGTCATCAGAAGGTTCTTCAGGGAAAAAAATAAATCCTATTGAGGAAATGAAAACTCTTGACTTGAAAACGAGTATGGGGATAACTGAAGCGTTGCGTCTGCAAATGGAGGTTCAGAAGCGGCTCCATGAACAACTTGAGATTCAAAGGAATTTGCAGTTAAGGATCGAGGAACAAGGTAAGTATCTACAGGAGATGTTCGAGCAGCAAAGAAAGATGGAAACCAAGCTGAAGACCTCCTCGTCGATCCTAGAAAACATGCCTCGTGCTGATGACGAACCCGAAGATTCAGAACAAGGTCGTGTGGCAGCTGGTATGAGCACGGAGAATGCCGAGGGCGCTCGAGAAGACGGTTCGCCTGCTGCAAGCAGGAAGCAAAAGGCACACGAAAGCGAAGCAATCAAATCAAGTGAAGGTAACTCTTCTTCCCCAGATGCCAAACGAGCTAAATCAGATGCAACAGCTTTATAG 2103 45.93 MDATWFDKDGVGESSRRITESDAAEVIDLILGKLMDLTEVKNVMEAIVSLCSKMGIIDFIFCSRSQTTVAHSKYNCAIGQFLFFFENSFCPIIRVHREIACGISGVESTPTKDQRVEIGFVNCSSSSIECIGTHLCNLLCVAPIAPSHRISFLFQSFLAIPVFVFDLCSISGSDWKRVASEVMSSSYPVLRKPFEDKYPKLPVSFQGSSQSEAMRHPIPRQAPPLVSNSGTVGHLFSSSSGFRNDFPLMQPLSQERSAQISPFISRSSNDESLLPPHGSSHSEVQSTIVTNNLNENNASWSTDTLQDLLDFSENVPDQNGQAQSVAGVLMPDDQAKRNDWPDWADQFISVDDALEPNWNEIFSDASAGDPKPERKRGRRQRRRRKGDDKNGGGGGFVEEEEDGRGGGRVCEEKKMRRVVVVVNDEEESKGGGGGNRREGEREGSMVLKSSSADFHAPQNQTSQVDSVLTAEFHSVSNSLSTSTTRPRMRWTPELHEAFVEAVNKLGGSENATPKGVLKLMNVEGLTIYHVKSHLQKYRTARYKPESSEGSSGKKINPIEEMKTLDLKTSMGITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQEMFEQQRKMETKLKTSSSILENMPRADDEPEDSEQGRVAAGMSTENAEGAREDGSPAASRKQKAHESEAIKSSEGNSSSPDAKRAKSDATAL 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21466592 21474970 - Lag0035442.1 Lac3g1914 602336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1914 700 Coils Coil 573 593 - -
Lac3g1914 700 MobiDBLite consensus disorder prediction 361 407 - -
Lac3g1914 700 FunFam Myb family transcription factor 484 542 - -
Lac3g1914 700 Pfam Myb-like DNA-binding domain 487 538 IPR001005 -
Lac3g1914 700 NCBIfam myb-like DNA-binding domain, SHAQKYF class 486 539 IPR006447 GO:0003677(InterPro)
Lac3g1914 700 SUPERFAMILY Homeodomain-like 483 539 IPR009057 -
Lac3g1914 700 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 482 542 IPR017930 -
Lac3g1914 700 MobiDBLite consensus disorder prediction 421 460 - -
Lac3g1914 700 Gene3D - 484 543 - -
Lac3g1914 700 Pfam MYB-CC type transfactor, LHEQLE motif 571 617 IPR025756 -
Lac3g1914 700 MobiDBLite consensus disorder prediction 662 678 - -
Lac3g1914 700 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 426 684 IPR046955 GO:0003700(InterPro)
Lac3g1914 700 MobiDBLite consensus disorder prediction 421 444 - -
Lac3g1914 700 MobiDBLite consensus disorder prediction 386 407 - -
Lac3g1914 700 MobiDBLite consensus disorder prediction 617 700 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2585 Lac-Chr11:41878888 Lac3g1914 Lac-Chr3:21466592 1.10E-68 dispersed
Lac1g3110 Lac-Chr1:51529183 Lac3g1914 Lac-Chr3:21466592 2.40E-27 dispersed
Lac3g1914 Lac-Chr3:21466592 Lac7g0460 Lac-Chr7:3641995 3.80E-22 dispersed
Lac3g1914 Lac-Chr3:21466592 Lac1g0810 Lac-Chr1:20627707 1.30E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23650 PF00249 Myb_DNA-binding 2.80E-09 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1914 - - - 0.0