Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1914 ATGGACGCCACCTGGTTCGATAAGGACGGAGTGGGAGAATCTTCAAGGAGAATCACCGAGTCGGACGCTGCTGAAGTAATCGATTTGATTTTGGGAAAGTTAATGGACCTGACAGAAGTGAAGAATGTAATGGAAGCCATCGTCTCTCTATGTTCGAAAATGGGCATTATTGATTTCATCTTTTGCTCTAGATCGCAAACCACAGTAGCCCACTCCAAATACAACTGTGCCATAGGCCAATTTCTCTTCTTTTTCGAAAATTCGTTTTGCCCAATCATTCGTGTGCATCGGGAAATTGCATGCGGAATCAGCGGTGTTGAATCAACACCCACCAAAGATCAGAGGGTCGAAATTGGATTCGTGAATTGTTCATCATCATCCATCGAGTGCATCGGAACCCATCTTTGCAACTTGCTTTGCGTTGCCCCCATCGCCCCTTCGCATCGGATTTCGTTTCTATTTCAAAGCTTTTTGGCGATTCCTGTATTCGTCTTTGATCTGTGTTCGATCTCTGGGAGTGACTGGAAGAGGGTCGCTTCCGAAGTTATGTCATCATCTTATCCAGTTCTTCGTAAGCCATTTGAAGACAAGTATCCCAAATTGCCTGTTTCTTTTCAGGGTTCCTCACAAAGTGAAGCCATGAGACATCCAATCCCCAGGCAGGCCCCTCCATTAGTTTCTAACAGTGGCACTGTTGGGCATCTGTTTTCATCGTCTTCTGGATTTCGAAACGATTTCCCATTGATGCAACCTTTGTCTCAAGAGAGAAGTGCCCAGATTTCTCCGTTCATTTCTCGGTCTTCTAATGATGAATCGTTGTTGCCTCCGCATGGTTCTTCCCATTCAGAAGTGCAATCCACAATAGTGACTAATAACTTGAATGAAAACAATGCATCTTGGAGTACGGATACACTTCAGGATTTGCTTGATTTTTCTGAGAATGTTCCTGACCAGAATGGTCAAGCGCAAAGCGTGGCTGGTGTCCTAATGCCGGATGACCAAGCTAAGAGGAATGATTGGCCTGATTGGGCTGATCAGTTCATTTCTGTTGATGATGCACTGGAGCCAAATTGGAATGAAATTTTTTCTGATGCTAGTGCAGGAGATCCTAAACCAGAGCGGAAACGGGGGCGGCGACAACGAAGAAGAAGAAAAGGGGATGACAAAAATGGGGGTGGGGGAGGGTTTGTTGAGGAAGAGGAAGATGGGAGGGGTGGGGGGAGAGTTTGTGAGGAAAAGAAAATGAGAAGGGTGGTGGTGGTTGTCAACGATGAAGAAGAAAGCAAAGGTGGCGGCGGTGGCAACCGACGAGAAGGGGAGAGGGAGGGATCGATGGTGCTAAAATCATCATCTGCTGATTTCCACGCTCCACAGAATCAAACGAGTCAAGTTGACTCTGTACTGACAGCAGAGTTTCATTCTGTTTCTAATTCACTCTCAACATCAACAACTCGACCTCGGATGCGATGGACACCAGAGCTTCATGAGGCATTTGTAGAAGCTGTCAATAAACTTGGTGGCAGCGAAAATGCCACTCCTAAGGGTGTCTTAAAGCTCATGAATGTTGAAGGCCTCACCATTTATCATGTGAAAAGCCACCTACAGAAATATAGAACCGCCAGATATAAACCAGAGTCATCAGAAGGTTCTTCAGGGAAAAAAATAAATCCTATTGAGGAAATGAAAACTCTTGACTTGAAAACGAGTATGGGGATAACTGAAGCGTTGCGTCTGCAAATGGAGGTTCAGAAGCGGCTCCATGAACAACTTGAGATTCAAAGGAATTTGCAGTTAAGGATCGAGGAACAAGGTAAGTATCTACAGGAGATGTTCGAGCAGCAAAGAAAGATGGAAACCAAGCTGAAGACCTCCTCGTCGATCCTAGAAAACATGCCTCGTGCTGATGACGAACCCGAAGATTCAGAACAAGGTCGTGTGGCAGCTGGTATGAGCACGGAGAATGCCGAGGGCGCTCGAGAAGACGGTTCGCCTGCTGCAAGCAGGAAGCAAAAGGCACACGAAAGCGAAGCAATCAAATCAAGTGAAGGTAACTCTTCTTCCCCAGATGCCAAACGAGCTAAATCAGATGCAACAGCTTTATAG 2103 45.93 MDATWFDKDGVGESSRRITESDAAEVIDLILGKLMDLTEVKNVMEAIVSLCSKMGIIDFIFCSRSQTTVAHSKYNCAIGQFLFFFENSFCPIIRVHREIACGISGVESTPTKDQRVEIGFVNCSSSSIECIGTHLCNLLCVAPIAPSHRISFLFQSFLAIPVFVFDLCSISGSDWKRVASEVMSSSYPVLRKPFEDKYPKLPVSFQGSSQSEAMRHPIPRQAPPLVSNSGTVGHLFSSSSGFRNDFPLMQPLSQERSAQISPFISRSSNDESLLPPHGSSHSEVQSTIVTNNLNENNASWSTDTLQDLLDFSENVPDQNGQAQSVAGVLMPDDQAKRNDWPDWADQFISVDDALEPNWNEIFSDASAGDPKPERKRGRRQRRRRKGDDKNGGGGGFVEEEEDGRGGGRVCEEKKMRRVVVVVNDEEESKGGGGGNRREGEREGSMVLKSSSADFHAPQNQTSQVDSVLTAEFHSVSNSLSTSTTRPRMRWTPELHEAFVEAVNKLGGSENATPKGVLKLMNVEGLTIYHVKSHLQKYRTARYKPESSEGSSGKKINPIEEMKTLDLKTSMGITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQEMFEQQRKMETKLKTSSSILENMPRADDEPEDSEQGRVAAGMSTENAEGAREDGSPAASRKQKAHESEAIKSSEGNSSSPDAKRAKSDATAL 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21466592 21474970 - Lag0035442.1 Lac3g1914 602336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1914 700 Coils Coil 573 593 - -
Lac3g1914 700 MobiDBLite consensus disorder prediction 361 407 - -
Lac3g1914 700 FunFam Myb family transcription factor 484 542 - -
Lac3g1914 700 Pfam Myb-like DNA-binding domain 487 538 IPR001005 -
Lac3g1914 700 NCBIfam myb-like DNA-binding domain, SHAQKYF class 486 539 IPR006447 GO:0003677(InterPro)
Lac3g1914 700 SUPERFAMILY Homeodomain-like 483 539 IPR009057 -
Lac3g1914 700 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 482 542 IPR017930 -
Lac3g1914 700 MobiDBLite consensus disorder prediction 421 460 - -
Lac3g1914 700 Gene3D - 484 543 - -
Lac3g1914 700 Pfam MYB-CC type transfactor, LHEQLE motif 571 617 IPR025756 -
Lac3g1914 700 MobiDBLite consensus disorder prediction 662 678 - -
Lac3g1914 700 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 426 684 IPR046955 GO:0003700(InterPro)
Lac3g1914 700 MobiDBLite consensus disorder prediction 421 444 - -
Lac3g1914 700 MobiDBLite consensus disorder prediction 386 407 - -
Lac3g1914 700 MobiDBLite consensus disorder prediction 617 700 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1914 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2585 Lac-Chr11:41878888 Lac3g1914 Lac-Chr3:21466592 1.10E-68 dispersed
Lac1g3110 Lac-Chr1:51529183 Lac3g1914 Lac-Chr3:21466592 2.40E-27 dispersed
Lac3g1914 Lac-Chr3:21466592 Lac7g0460 Lac-Chr7:3641995 3.80E-22 dispersed
Lac3g1914 Lac-Chr3:21466592 Lac1g0810 Lac-Chr1:20627707 1.30E-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac11g2446 . 190 391 G2-like Transcription Factor Family AT5G16560 50.7 4.7e-41 166.4
Lac11g2446 . 198 391 G2-like Transcription Factor Family AT4G17695 50.3 1.6e-36 151.0
Lac2g0265 . 10 183 G2-like Transcription Factor Family AT5G42630 58.2 2.6e-41 166.4
Lac6g0365 . 16 162 G2-like Transcription Factor Family AT5G42630 60.6 2.4e-39 159.8
Lac7g2753 . 1 322 G2-like Transcription Factor Family AT5G59570 50.7 1.9e-63 240.4
Lac9g2452 . 19 216 G2-like Transcription Factor Family AT5G59570 50.2 5.5e-39 159.1
Lac13g0461 . 19 260 G2-like Transcription Factor Family AT1G25550 50.6 4.0e-52 202.6
Lac8g1421 . 20 266 G2-like Transcription Factor Family AT1G25550 54.2 4.5e-51 199.1
Lac7g2753 . 1 295 G2-like Transcription Factor Family AT3G46640 50.7 6.0e-63 238.8
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT5G05090 56.9 2.8e-74 276.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT5G05090 57.4 1.5e-72 270.4
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT4G13640 56.7 1.2e-62 237.7
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac9g2297 . 1 364 G2-like Transcription Factor Family AT1G79430 53.5 9.1e-81 298.1
Lac12g0030 . 3 356 G2-like Transcription Factor Family AT1G79430 52.8 1.2e-80 297.7
Lac7g0460 . 44 208 G2-like Transcription Factor Family AT1G79430 61.2 1.7e-39 161.0
Lac1g3110 . 85 330 G2-like Transcription Factor Family AT2G01060 62.8 4.2e-58 222.2
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 2.4e-91 333.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT3G10760 57.5 4.2e-88 322.4
Lac1g1554 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.6e-60 230.3
Lac3g1914 . 485 626 G2-like Transcription Factor Family AT4G28610 71.3 3.5e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005858 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 1 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23650 PF00249 Myb_DNA-binding 2.80E-09 CL0123 Lac TF