Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1942 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGGAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAAAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGGCGTACTCCATCCCAGTGCCTCGAGCGGTATGAGAAGCTCCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCAAGAAAATTGCGTCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCGGATCCGGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACCAGGGGAAAGAAGGCAAAAAGGAAAGCCAGGGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCCCTACAAAAAAGAAGAGAGCTTAAAGCTGCAGGGATTGATACTCGACAACGAAAGAGAAAGAGGAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTGGTGAAGAAGATAGACCAGTGGAACAGCCGAAATTTCCAACAACAATTGAAGAACTTGAAGGAAAAAGAAGGATTGACGTAGAAGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGGCAAGATGCTCCATCTGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCTCCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGATCTTCTTGCTGGTAACGAAGAACTTGCAGAAGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACCCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGCTAACACCTTCAGCAACTCCTGGTGGCGTCGGTCTCACTCCTCGTAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGCATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACATATCAATGAAGATATGGACACACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGGAGAAATCTTAGCCTAGGGTTGGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAGCCAATTCCAGAAGACAAAGAAGAACCAGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCACGGCCTCCTACTGCTTCTTTGGAGCTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGTTCATTCGTTCCACCTACCCCTATTGAGCAGGCTGATGAATTGATAAGAAAGGAACTTCTTGCTTTATTAGAGCATGATAATGCGAAGTACCCAATTGACGAAAAGGTCAACAAGGAGAAAAAGAAAGGTTCCAAGCGCACTGGAAATGGACCTACTGCAGCCATCCCCTCAATAGATGATTTTGAAGAAACTGAGATGGAAGAGGCTGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGTTGCAATGGGGCATGAAAATGAATCCTTAGATGAATTTGTGGAAGCTCACAAAACCTGCTTGAGTGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCCAGCGTTGCTGGAAACCATGAGAAACTAGCTGCCCTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGACGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCACAAATTGAGGCGACTTTCAAGCAGATGGACACTGCAGCAACGGAGCTTGAGTGCTTCGAAGCTCTTCAAAAACAAGAGCTGTCAGCTGCTTCGCACAGGATTAGTGGTATCTGGGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGTAACCTGTTGGCGGACTTGGAAAAGATGCAGAAAGTCATGGATGAGCGCAAGGCACAAGCACAAAAGGAAGAAAAAATCGCAGCAGAGAATCGTGCTCTTCAGTTGGCTGAGGCTGAGGCTAATCAAACTGTTGGAGAAAATGCTGATAGTTCTGAACCTATGCCCGCATTAGCAGTTGATCAGGAAAACTCTGCCTCATCTCCCAATGAATTAACAGGTGAACAAGCGAACTCATCCATGGGACATAAACATGAAACTTCTAATGCCATGGATATTGACGCAGAAGTAGAAAATGCAGCGACGAGCTCGGATGTTGGCTTATCTGATAACAAACTACCTTCTGCAGCAGAAGAGAATGCATCATTGCATGACAATGGTTTAGAAGATTCTGATAAAAGTCAAACCATTGATGTTCCTACTCCAGAACTCTCAGGCCCTTCTGCAAATGGCAACCCAGAAGTGACCGTTGCAGTGGAAAATAAAAGCAACGATTCGGTTGATGAAGCAGCTACAGAAAATGCCGAATGTAGTACCGATATTGTTGAGGAAGTCAAAGATGTTGAAACTCAGCAGCCTGTGATTGAAGCTGGAAACTCAGATATGAATTCAACTAATCTGGATTCGGGTGCACCTGTATCTTCTAATGAGGATGGTCCTGCCAATAATGATAACATGGAAGTCCCTCGTGGCGAAGGGAAAGCAACGGAATCGAATGCCTAG 3099 44.63 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDTHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADELIRKELLALLEHDNAKYPIDEKVNKEKKKGSKRTGNGPTAAIPSIDDFEETEMEEADYLIKEEARYLCVAMGHENESLDEFVEAHKTCLSDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQMDTAATELECFEALQKQELSAASHRISGIWEEVQKQKELERTLQLRYGNLLADLEKMQKVMDERKAQAQKEEKIAAENRALQLAEAEANQTVGENADSSEPMPALAVDQENSASSPNELTGEQANSSMGHKHETSNAMDIDAEVENAATSSDVGLSDNKLPSAAEENASLHDNGLEDSDKSQTIDVPTPELSGPSANGNPEVTVAVENKSNDSVDEAATENAECSTDIVEEVKDVETQQPVIEAGNSDMNSTNLDSGAPVSSNEDGPANNDNMEVPRGEGKATESNA 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22175987 22185839 - Lag0035470.1 Lac3g1942 602364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1942 1032 MobiDBLite consensus disorder prediction 985 1014 - -
Lac3g1942 1032 Gene3D - 60 114 - -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 925 947 - -
Lac3g1942 1032 Coils Coil 167 187 - -
Lac3g1942 1032 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 807 IPR047242 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0005681(PANTHER)
Lac3g1942 1032 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 157 176 - -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 400 414 - -
Lac3g1942 1032 Gene3D - 5 59 - -
Lac3g1942 1032 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Lac3g1942 1032 CDD SANT 10 53 IPR001005 -
Lac3g1942 1032 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 853 878 - -
Lac3g1942 1032 CDD SANT_CDC5_II 55 106 IPR047240 -
Lac3g1942 1032 FunFam CDC5 cell division cycle 5-like 60 120 - -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 382 421 - -
Lac3g1942 1032 FunFam CDC5 cell division cycle 5-like 5 59 - -
Lac3g1942 1032 Coils Coil 796 832 - -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 893 947 - -
Lac3g1942 1032 Pfam Myb-like DNA-binding domain 10 70 - -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 213 234 - -
Lac3g1942 1032 SMART sant 58 105 IPR001005 -
Lac3g1942 1032 SMART sant 6 55 IPR001005 -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 978 1032 - -
Lac3g1942 1032 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 600 626 - -
Lac3g1942 1032 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Lac3g1942 1032 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 113 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1942 Lac-Chr3:22175987 Lac7g2535 Lac-Chr7:43434192 2.20E-10 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23651 PF11831 Myb_Cef 3.00E-59 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1942 K12860 - csv:101206265 1729.92