Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1942 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGGAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAAAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGGCGTACTCCATCCCAGTGCCTCGAGCGGTATGAGAAGCTCCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCAAGAAAATTGCGTCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCGGATCCGGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACCAGGGGAAAGAAGGCAAAAAGGAAAGCCAGGGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCCCTACAAAAAAGAAGAGAGCTTAAAGCTGCAGGGATTGATACTCGACAACGAAAGAGAAAGAGGAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTGGTGAAGAAGATAGACCAGTGGAACAGCCGAAATTTCCAACAACAATTGAAGAACTTGAAGGAAAAAGAAGGATTGACGTAGAAGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGGCAAGATGCTCCATCTGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCTCCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGATCTTCTTGCTGGTAACGAAGAACTTGCAGAAGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACCCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGCTAACACCTTCAGCAACTCCTGGTGGCGTCGGTCTCACTCCTCGTAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGCATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACATATCAATGAAGATATGGACACACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGGAGAAATCTTAGCCTAGGGTTGGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAGCCAATTCCAGAAGACAAAGAAGAACCAGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCACGGCCTCCTACTGCTTCTTTGGAGCTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGTTCATTCGTTCCACCTACCCCTATTGAGCAGGCTGATGAATTGATAAGAAAGGAACTTCTTGCTTTATTAGAGCATGATAATGCGAAGTACCCAATTGACGAAAAGGTCAACAAGGAGAAAAAGAAAGGTTCCAAGCGCACTGGAAATGGACCTACTGCAGCCATCCCCTCAATAGATGATTTTGAAGAAACTGAGATGGAAGAGGCTGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGTTGCAATGGGGCATGAAAATGAATCCTTAGATGAATTTGTGGAAGCTCACAAAACCTGCTTGAGTGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCCAGCGTTGCTGGAAACCATGAGAAACTAGCTGCCCTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGACGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCACAAATTGAGGCGACTTTCAAGCAGATGGACACTGCAGCAACGGAGCTTGAGTGCTTCGAAGCTCTTCAAAAACAAGAGCTGTCAGCTGCTTCGCACAGGATTAGTGGTATCTGGGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGTAACCTGTTGGCGGACTTGGAAAAGATGCAGAAAGTCATGGATGAGCGCAAGGCACAAGCACAAAAGGAAGAAAAAATCGCAGCAGAGAATCGTGCTCTTCAGTTGGCTGAGGCTGAGGCTAATCAAACTGTTGGAGAAAATGCTGATAGTTCTGAACCTATGCCCGCATTAGCAGTTGATCAGGAAAACTCTGCCTCATCTCCCAATGAATTAACAGGTGAACAAGCGAACTCATCCATGGGACATAAACATGAAACTTCTAATGCCATGGATATTGACGCAGAAGTAGAAAATGCAGCGACGAGCTCGGATGTTGGCTTATCTGATAACAAACTACCTTCTGCAGCAGAAGAGAATGCATCATTGCATGACAATGGTTTAGAAGATTCTGATAAAAGTCAAACCATTGATGTTCCTACTCCAGAACTCTCAGGCCCTTCTGCAAATGGCAACCCAGAAGTGACCGTTGCAGTGGAAAATAAAAGCAACGATTCGGTTGATGAAGCAGCTACAGAAAATGCCGAATGTAGTACCGATATTGTTGAGGAAGTCAAAGATGTTGAAACTCAGCAGCCTGTGATTGAAGCTGGAAACTCAGATATGAATTCAACTAATCTGGATTCGGGTGCACCTGTATCTTCTAATGAGGATGGTCCTGCCAATAATGATAACATGGAAGTCCCTCGTGGCGAAGGGAAAGCAACGGAATCGAATGCCTAG 3099 44.63 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDTHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADELIRKELLALLEHDNAKYPIDEKVNKEKKKGSKRTGNGPTAAIPSIDDFEETEMEEADYLIKEEARYLCVAMGHENESLDEFVEAHKTCLSDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQMDTAATELECFEALQKQELSAASHRISGIWEEVQKQKELERTLQLRYGNLLADLEKMQKVMDERKAQAQKEEKIAAENRALQLAEAEANQTVGENADSSEPMPALAVDQENSASSPNELTGEQANSSMGHKHETSNAMDIDAEVENAATSSDVGLSDNKLPSAAEENASLHDNGLEDSDKSQTIDVPTPELSGPSANGNPEVTVAVENKSNDSVDEAATENAECSTDIVEEVKDVETQQPVIEAGNSDMNSTNLDSGAPVSSNEDGPANNDNMEVPRGEGKATESNA 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22175987 22185839 - Lag0035470.1 Lac3g1942 602364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1942 1032 MobiDBLite consensus disorder prediction 985 1014 - -
Lac3g1942 1032 Gene3D - 60 114 - -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 925 947 - -
Lac3g1942 1032 Coils Coil 167 187 - -
Lac3g1942 1032 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 807 IPR047242 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0005681(PANTHER)
Lac3g1942 1032 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 157 176 - -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 400 414 - -
Lac3g1942 1032 Gene3D - 5 59 - -
Lac3g1942 1032 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Lac3g1942 1032 CDD SANT 10 53 IPR001005 -
Lac3g1942 1032 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 853 878 - -
Lac3g1942 1032 CDD SANT_CDC5_II 55 106 IPR047240 -
Lac3g1942 1032 FunFam CDC5 cell division cycle 5-like 60 120 - -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 382 421 - -
Lac3g1942 1032 FunFam CDC5 cell division cycle 5-like 5 59 - -
Lac3g1942 1032 Coils Coil 796 832 - -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 893 947 - -
Lac3g1942 1032 Pfam Myb-like DNA-binding domain 10 70 - -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 213 234 - -
Lac3g1942 1032 SMART sant 58 105 IPR001005 -
Lac3g1942 1032 SMART sant 6 55 IPR001005 -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 978 1032 - -
Lac3g1942 1032 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 600 626 - -
Lac3g1942 1032 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Lac3g1942 1032 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Lac3g1942 1032 MobiDBLite consensus disorder prediction 113 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1942 K12860 - - csv:101206265 1729.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1942 Lac-Chr3:22175987 Lac7g2535 Lac-Chr7:43434192 2.20E-10 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g1942 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.1 0.0e+00 1211.1
Lac3g0437 . 454 908 MYB-Related Transcription Factor Family AT3G18100 57.4 4.5e-153 539.3
Lac7g2535 . 55 422 MYB-Related Transcription Factor Family AT3G18100 60.6 2.4e-130 463.8
Lac3g0437 . 454 908 MYB-Related Transcription Factor Family AT3G18100 57.4 4.5e-153 539.3
Lac7g2535 . 55 422 MYB-Related Transcription Factor Family AT3G18100 60.6 2.4e-130 463.8
Lac3g1942 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.1 0.0e+00 1211.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23651 PF11831 Myb_Cef 3.00E-59 No_clan Lac TF