Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g1976 | ATGTGTGTGGAACAAAAGAATCACGATGCAGAGGAGGGGACGCTGGAGATTGGCATGGAATATAGAACAGTCTCTGGTGTTGCTGGTCCCTTGGTTATTCTGGACAAAGTCAAGGGACCTAAATTTCAGGAAATTGTTAATATTCGTCTAGGTGATGGAACAACCAGACGTGGTCAAGTCCTGGAAGTTGATGGCGAGAAAGCTGTTGTGCAGGTATTTGAGGGGACATCTGGAATTGATAACAAATATACAACTGTGCAATTTACTGGAGAGGTTTTGAAGACTCCAGTCTCCTTGGACATGCTTGGGCGAATTTTTAATGGTTCTGGAAAACCCATTGATAATGGTCCTCCTATCTTGCCTGAGGCTTACTTGGATATTTCAGGGAGTTCTATAAACCCTAGTGAGAGAACTTATCCCGAGGAGATGATACAGACTGGGATTTCTACAATCGATGTCATGAATTCCATTGCTAGAGGACAAAAGATCCCACTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCTCAGATATGTCGTCAAGCTGGCTTGGTAAAGCGGTTGGAGAAATCTAACGATCTTCTTGAGGGTGGTGAAGAGGACAACTTTGCCATTGTTTTTGCCGCTATGGGTGTTAACATGGAGACTGCTCAATTTTTTAAACGTGATTTTGAGGAAAATGGTTCAATGGAGAGAGTGACCCTATTTTTGAACCTGGCTAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACCACTGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTTCTCGTCATACTGACAGATATGAGTTCTTATGCCGATGCGCTTCGAGAGGTGTCTGCTGCACGAGAGGAAGTACCTGGAAGGCGTGGGTACCCTGGTTATATGTATACGGATCTTGCTACAATCTATGAAAGAGCTGGACGTATTGAAGGACGCAAAGGATCCATCACACAAATCCCAATCCTCACTATGCCAAACGATGATATTACACATCCTACTCCCGATCTTACTGGCTATATTACTGAGGGACAGATCTACATCGACAGGCAGCTCTACAACAGACAGATATACCCACCAATTAATGTCCTTCCTTCACTGTCTCGTCTTATGAAGAGTGCCATTGGTGAGGGAATGACCCGTAGGGATCATGCTGATGTATCCAACCAGCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAGGCAATGAAAGCCGTGGTCGGAGAAGAAGCACTCTCTTCCGAGGATCTGCTCTATTTAGAGTTCTTGGACAAATTTGAGAGGAAGTTTGTCACTCAAGGAGCGTACGATACTCGAAACATTTTCCAATCGCTCGATCTGGCATGGACACTGCTTCGCATTTTCCCTCGCGAACTTCTCCATCGTATACCTGCAAAGACTCTTGATCAGTTTTACAGCCGAGAATCTGCAAATTGA | 1467 | 44.17 | MCVEQKNHDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSNDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRESAN | 488 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 22868022 | 22872623 | + | Lag0035504.1 | Lac3g1976 | 602398 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g1976 | 488 | Pfam | ATP synthase alpha/beta family, nucleotide-binding domain | 147 | 377 | IPR000194 | GO:0005524(InterPro) | |
| Lac3g1976 | 488 | Hamap | V-type ATP synthase beta chain [atpB]. | 18 | 486 | IPR022879 | - | |
| Lac3g1976 | 488 | FunFam | V-type proton ATPase subunit B, brain | 29 | 488 | - | - | |
| Lac3g1976 | 488 | NCBIfam | V-type ATPase subunit B | 20 | 487 | IPR005723 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Lac3g1976 | 488 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 94 | 383 | IPR027417 | - | |
| Lac3g1976 | 488 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT B | 16 | 486 | IPR022879 | GO:0007035(PANTHER)|GO:0046961(PANTHER) | |
| Lac3g1976 | 488 | ProSitePatterns | ATP synthase alpha and beta subunits signature. | 368 | 377 | IPR020003 | GO:0005524(InterPro) | |
| Lac3g1976 | 488 | Gene3D | - | 29 | 488 | - | - | |
| Lac3g1976 | 488 | Pfam | ATP synthase alpha/beta family, beta-barrel domain | 24 | 90 | IPR004100 | GO:0046034(InterPro)|GO:1902600(InterPro) | |
| Lac3g1976 | 488 | CDD | ATP-synt_V_A-type_beta_C | 387 | 481 | - | - | |
| Lac3g1976 | 488 | PIRSF | V-ATPsynth_beta/V-ATPase_B | 11 | 488 | IPR022879 | - | |
| Lac3g1976 | 488 | Pfam | C-terminal domain of V and A type ATP synthase | 383 | 482 | - | - | |
| Lac3g1976 | 488 | CDD | ATP-synt_V_A-type_beta_N | 20 | 91 | - | - | |
| Lac3g1976 | 488 | CDD | V_A-ATPase_B | 92 | 385 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac3g1976 | K02147 | - | - | csv:101211838 | 955.281 |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lac6g0237 | . | 47 | 1042 | Primary Pumps ATPases(2) | AT1G10130 | 83.5 | 0.0e+00 | 1632.5 | |
| Lac9g2546 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 80.9 | 0.0e+00 | 1338.9 | |
| Lac4g1440 | . | 10 | 824 | Primary Pumps ATPases(2) | AT2G28520 | 56.3 | 9.2e-262 | 900.6 | |
| Lac6g0465 | . | 2 | 519 | Primary Pumps ATPases(2) | AT2G28520 | 69.9 | 4.9e-215 | 745.3 | |
| Lac6g0466 | . | 1 | 271 | Primary Pumps ATPases(2) | AT2G28520 | 52.2 | 7.4e-70 | 263.1 | |
| Lac4g1440 | . | 6 | 829 | Primary Pumps ATPases(2) | AT2G21410 | 67.8 | 0.0e+00 | 1110.5 | |
| Lac9g2546 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.4 | 4.7e-298 | 1021.1 | |
| Lac6g0465 | . | 9 | 524 | Primary Pumps ATPases(2) | AT2G21410 | 78.3 | 3.1e-241 | 832.4 | |
| Lac6g0466 | . | 1 | 271 | Primary Pumps ATPases(2) | AT2G21410 | 69.0 | 1.6e-101 | 368.2 | |
| Lac4g1440 | . | 8 | 829 | Primary Pumps ATPases(2) | AT4G39080 | 68.6 | 0.0e+00 | 1108.6 | |
| Lac9g2546 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.8 | 2.3e-297 | 1018.8 | |
| Lac6g0465 | . | 9 | 524 | Primary Pumps ATPases(2) | AT4G39080 | 78.1 | 1.7e-239 | 826.6 | |
| Lac6g0466 | . | 1 | 271 | Primary Pumps ATPases(2) | AT4G39080 | 70.1 | 3.7e-101 | 367.1 | |
| Lac6g0480 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.1e-60 | 229.2 | |
| Lac6g0479 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.1e-60 | 229.2 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.1e-60 | 229.2 | |
| Lac6g0480 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 2.1e-66 | 249.6 | |
| Lac6g0479 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 2.7e-66 | 249.2 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT1G75630 | 78.5 | 5.9e-53 | 204.9 | |
| Lac6g0480 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 6.5e-74 | 274.2 | |
| Lac6g0479 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 2.5e-73 | 272.3 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT2G16510 | 99.3 | 7.0e-60 | 227.6 | |
| Lac6g0480 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.8e-52 | 202.6 | |
| Lac6g0479 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 6.8e-52 | 200.7 | |
| Lac2g0915 | . | 9 | 103 | Primary Pumps ATPases(2) | AT1G19910 | 98.9 | 7.3e-38 | 154.1 | |
| Lac2g0627 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 83.6 | 1.9e-71 | 266.5 | |
| Lac6g0682 | . | 1 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 85.6 | 3.2e-71 | 265.8 | |
| Lac6g0480 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.9e-60 | 227.6 | |
| Lac6g0479 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.9e-60 | 227.6 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.9e-60 | 227.6 | |
| Lac2g0627 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 76.2 | 5.8e-75 | 278.1 | |
| Lac6g0682 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 72.9 | 5.0e-71 | 265.0 | |
| Lac7g2667 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 81.2 | 0.0e+00 | 1684.8 | |
| Lac7g2667 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 81.0 | 0.0e+00 | 1682.5 | |
| Lac6g0237 | . | 47 | 1042 | Primary Pumps ATPases(2) | AT1G10130 | 83.5 | 0.0e+00 | 1632.5 | |
| Lac7g2667 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 66.0 | 0.0e+00 | 1328.2 | |
| Lac3g1976 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.7 | 3.0e-268 | 921.4 | |
| Lac8g2013 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 84.0 | 1.5e-182 | 636.3 | |
| Lac9g1002 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 81.6 | 3.7e-116 | 415.2 | |
| Lac1g2331 | . | 3 | 432 | Primary Pumps ATPases(2) | AT3G42050 | 72.4 | 2.7e-183 | 639.0 | |
| Lac6g0480 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 6.5e-74 | 274.2 | |
| Lac6g0479 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 2.5e-73 | 272.3 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT2G16510 | 99.3 | 7.0e-60 | 227.6 | |
| Lac3g1976 | . | 6 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 96.3 | 2.7e-269 | 924.9 | |
| Lac8g0070 | . | 1 | 176 | Primary Pumps ATPases(2) | AT1G64200 | 76.5 | 2.9e-65 | 245.7 | |
| Lac3g1976 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 96.0 | 2.1e-266 | 915.2 | |
| Lac9g2546 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 80.9 | 0.0e+00 | 1338.9 | |
| Lac4g1440 | . | 10 | 824 | Primary Pumps ATPases(2) | AT2G28520 | 56.3 | 9.2e-262 | 900.6 | |
| Lac6g0465 | . | 2 | 519 | Primary Pumps ATPases(2) | AT2G28520 | 69.9 | 4.9e-215 | 745.3 | |
| Lac6g0466 | . | 1 | 271 | Primary Pumps ATPases(2) | AT2G28520 | 52.2 | 7.4e-70 | 263.1 | |
| Lac8g0547 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 9.4e-192 | 666.8 | |
| Lac8g0070 | . | 1 | 225 | Primary Pumps ATPases(2) | AT4G11150 | 74.8 | 1.1e-84 | 310.5 | |
| Lac4g3091 | . | 1 | 623 | Primary Pumps ATPases(2) | AT1G78900 | 93.3 | 0.0e+00 | 1175.6 | |
| Lac3g1976 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.7 | 3.0e-268 | 921.4 | |
| Lac3g1976 | . | 6 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 96.3 | 2.7e-269 | 924.9 | |
| Lac3g1976 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 96.0 | 2.1e-266 | 915.2 | |
| Lac8g2013 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 84.0 | 1.5e-182 | 636.3 | |
| Lac9g1002 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 81.6 | 3.7e-116 | 415.2 | |
| Lac8g0070 | . | 1 | 225 | Primary Pumps ATPases(2) | AT4G11150 | 74.8 | 1.1e-84 | 310.5 | |
| Lac8g0070 | . | 1 | 226 | Primary Pumps ATPases(2) | AT3G08560 | 69.6 | 2.6e-76 | 282.7 | |
| Lac8g0070 | . | 1 | 176 | Primary Pumps ATPases(2) | AT1G64200 | 76.5 | 2.9e-65 | 245.7 | |
| Lac1g2331 | . | 3 | 432 | Primary Pumps ATPases(2) | AT3G42050 | 72.4 | 2.7e-183 | 639.0 | |
| Lac9g2546 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 80.9 | 0.0e+00 | 1338.9 | |
| Lac4g1440 | . | 10 | 824 | Primary Pumps ATPases(2) | AT2G28520 | 56.3 | 9.2e-262 | 900.6 | |
| Lac6g0465 | . | 2 | 519 | Primary Pumps ATPases(2) | AT2G28520 | 69.9 | 4.9e-215 | 745.3 | |
| Lac6g0466 | . | 1 | 271 | Primary Pumps ATPases(2) | AT2G28520 | 52.2 | 7.4e-70 | 263.1 | |
| Lac4g1440 | . | 6 | 829 | Primary Pumps ATPases(2) | AT2G21410 | 67.8 | 0.0e+00 | 1110.5 | |
| Lac9g2546 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.4 | 4.7e-298 | 1021.1 | |
| Lac6g0465 | . | 9 | 524 | Primary Pumps ATPases(2) | AT2G21410 | 78.3 | 3.1e-241 | 832.4 | |
| Lac6g0466 | . | 1 | 271 | Primary Pumps ATPases(2) | AT2G21410 | 69.0 | 1.6e-101 | 368.2 | |
| Lac4g1440 | . | 8 | 829 | Primary Pumps ATPases(2) | AT4G39080 | 68.6 | 0.0e+00 | 1108.6 | |
| Lac9g2546 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.8 | 2.3e-297 | 1018.8 | |
| Lac6g0465 | . | 9 | 524 | Primary Pumps ATPases(2) | AT4G39080 | 78.1 | 1.7e-239 | 826.6 | |
| Lac6g0466 | . | 1 | 271 | Primary Pumps ATPases(2) | AT4G39080 | 70.1 | 3.7e-101 | 367.1 | |
| Lac6g0480 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.1e-60 | 229.2 | |
| Lac6g0479 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.1e-60 | 229.2 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.1e-60 | 229.2 | |
| Lac6g0480 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.8e-52 | 202.6 | |
| Lac6g0479 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 6.8e-52 | 200.7 | |
| Lac2g0915 | . | 9 | 103 | Primary Pumps ATPases(2) | AT1G19910 | 98.9 | 7.3e-38 | 154.1 | |
| Lac6g0480 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.9e-60 | 227.6 | |
| Lac6g0479 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.9e-60 | 227.6 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.9e-60 | 227.6 | |
| Lac6g0480 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 2.1e-66 | 249.6 | |
| Lac6g0479 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 2.7e-66 | 249.2 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT1G75630 | 78.5 | 5.9e-53 | 204.9 | |
| Lac6g0480 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 6.5e-74 | 274.2 | |
| Lac6g0479 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 2.5e-73 | 272.3 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT2G16510 | 99.3 | 7.0e-60 | 227.6 | |
| Lac2g0627 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 76.2 | 5.8e-75 | 278.1 | |
| Lac6g0682 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 72.9 | 5.0e-71 | 265.0 | |
| Lac2g0627 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 83.6 | 1.9e-71 | 266.5 | |
| Lac6g0682 | . | 1 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 85.6 | 3.2e-71 | 265.8 | |
| Lac8g0547 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28710 | 94.3 | 8.1e-199 | 690.3 | |
| Lac8g0547 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 9.4e-192 | 666.8 | |
| Lac7g2667 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 81.2 | 0.0e+00 | 1684.8 | |
| Lac7g2667 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 66.0 | 0.0e+00 | 1328.2 | |
| Lac6g0237 | . | 47 | 1042 | Primary Pumps ATPases(2) | AT1G10130 | 83.5 | 0.0e+00 | 1632.5 | |
| Lac7g2667 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 81.0 | 0.0e+00 | 1682.5 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0003683 | 2 | 2 | 1 | 2 | 2 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 1 | 3 | 1 | 1 | 4 | 2 | 2 | 46 |