Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2014 ATGGTGCCAACAATCTGTGCGAGTTGCAATGAGATAATTAGCAAATGGGAAAGAATGATCTCACAAGACGGATTTTGTGAATTGGACGTGATGCCTTATTTGCAAAATTTGGCAGCCGATGTCATTTCTCGAACAACATTTGGAAGTAGTTATGAAGAAGGAAAAATTATCTTTCAACATCTAAAAGAATTGACTAATTTGGTCATTGAAGTTAATTCTAGAGTTTACATACCGGGATGGAGGTTTCTACCAACCAAGTCTAACAATAGAATGAAAAAGATAAGTAAAGAAATAAAAACTTTACTCTTTAGCCTTGTCAACAAAAGGCAGATGGCTATGAAGGCAGGTGAAACCATGCCTACTGATCTATTAAGCATCCTCTTACAATCAAATTTCAAAGAAATTCAAGAACATGGAAACCACAAGAATATTGGAATGAGTATACAAGACATGGTCGAAGAATGTAAGGTTTTCTATTTTGCTGGCCAAGAAACCACTGCGGTGTTACTAGTTTGGACCATGGTTTTGTTGAGTTCATATTCAAAATGGCAAGATCGAGCAAGAGCAGAGGTCTTAGAAGTCTTTGGCGACAACAAACCAGATTTTGATGGTTTAAATCGTCTAAAAATTGTTACTATGATTTTGAACGAGGTTCTGAGACTATATCCACCAGCAGGGGTGTTTACTCGTCTTGTTCAAAAGGAAACAAGGCTTGGAAATTTGACTTTACCAGCTGGGGTGATGTTGAGTTTCCCAATTATTCTTTTACATCATGATCAAGAGCTATGGGGTGAAGATGCAAATGAATTCAATCCAGAAAGATTCGCTGAGGGAGTTTCAAAAGCAACAAAAAATCAAACTGCCTTCTTCCCATTCGGATGGGGTCCTCGCATATGCATTGGACAAAATTTTGCAATGATTGAGGCCAAAATTGCATTGGCGATGATCCTACAGCACTTCTCATTTGAGCTTTCTTCTTCATATACTCATGCTCCTACATCCATTTTAACTATTCAACCTCAACATGGAGCTCACATTGTCCTACATAAACTTTAA 1056 37.59 MVPTICASCNEIISKWERMISQDGFCELDVMPYLQNLAADVISRTTFGSSYEEGKIIFQHLKELTNLVIEVNSRVYIPGWRFLPTKSNNRMKKISKEIKTLLFSLVNKRQMAMKAGETMPTDLLSILLQSNFKEIQEHGNHKNIGMSIQDMVEECKVFYFAGQETTAVLLVWTMVLLSSYSKWQDRARAEVLEVFGDNKPDFDGLNRLKIVTMILNEVLRLYPPAGVFTRLVQKETRLGNLTLPAGVMLSFPIILLHHDQELWGEDANEFNPERFAEGVSKATKNQTAFFPFGWGPRICIGQNFAMIEAKIALAMILQHFSFELSSSYTHAPTSILTIQPQHGAHIVLHKL 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23764890 23767541 + Lag0035542.1 Lac3g2014 602436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2014 351 PRINTS P450 superfamily signature 299 310 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g2014 351 PRINTS P450 superfamily signature 290 299 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g2014 351 PRINTS P450 superfamily signature 161 178 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g2014 351 PRINTS P450 superfamily signature 213 224 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g2014 351 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 292 301 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lac3g2014 351 PANTHER CYTOCHROME P450 FAMILY MEMBER 1 343 IPR050665 GO:0004497(PANTHER)
Lac3g2014 351 Gene3D Cytochrome P450 1 351 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g2014 351 SUPERFAMILY Cytochrome P450 1 349 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g2014 351 PRINTS E-class P450 group I signature 150 167 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g2014 351 PRINTS E-class P450 group I signature 299 322 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g2014 351 PRINTS E-class P450 group I signature 170 196 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g2014 351 PRINTS E-class P450 group I signature 37 55 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g2014 351 PRINTS E-class P450 group I signature 289 299 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g2014 351 PRINTS E-class P450 group I signature 253 277 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g2014 351 Pfam Cytochrome P450 1 326 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g2843 Lac-Chr2:44657521 Lac3g2014 Lac-Chr3:23764890 4.10E-132 dispersed
Lac3g2014 Lac-Chr3:23764890 Lac3g2151 Lac-Chr3:26961459 1.40E-174 dispersed
Lac3g2014 Lac-Chr3:23764890 Lac3g0839 Lac-Chr3:6698421 3.60E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2014 - - - 0.0