Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g2016 | ATGAGCTCTGGAGGTCTAGTGAGTGCACTACTAGGTGTGAATGAATTATTTGAAATGAGATGGATTGGTTGGGCTGGTGTAAATGTGCCAGATAAGGTAGGACAAAAGGCACTGAGTGAAGCTTTGGCTGAAAAGAGGTGTATTCATGTTTTCCTTGATGAAGAGATTGATCATCAATACTACAATGGTTATTGCAACAACATTTTATGGCCTTTGTTTCATTACCTTGGCCTTCCTCAAGAAGATCGTCTTGCAGTTATCATCCTTCTCTCCTACAGAGATGTGGAAAAAATCGAAAACCTCCAATTCCCTTCATCTTTTCATCTCCACATAAAAAGCCCTAAGTTCAAGTTGGGCTAG | 360 | 40.28 | MSSGGLVSALLGVNELFEMRWIGWAGVNVPDKVGQKALSEALAEKRCIHVFLDEEIDHQYYNGYCNNILWPLFHYLGLPQEDRLAVIILLSYRDVEKIENLQFPSSFHLHIKSPKFKLG | 119 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 23809725 | 23810398 | + | Lag0035544.1 | Lac3g2016 | 602438 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g2016 | 119 | Pfam | Glycosyltransferase family 20 | 1 | 81 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
| Lac3g2016 | 119 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 2 | 83 | IPR001830 | GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER) | |
| Lac3g2016 | 119 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 2 | 76 | - | - | |
| Lac3g2016 | 119 | Gene3D | Glycogen Phosphorylase B; | 1 | 97 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g2016 | Lac-Chr3:23809725 | Lac10g1001 | Lac-Chr10:8040725 | 4.10E-38 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac3g2016 | K16055 | - | csv:101204478 | 159.073 |