Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2016 ATGAGCTCTGGAGGTCTAGTGAGTGCACTACTAGGTGTGAATGAATTATTTGAAATGAGATGGATTGGTTGGGCTGGTGTAAATGTGCCAGATAAGGTAGGACAAAAGGCACTGAGTGAAGCTTTGGCTGAAAAGAGGTGTATTCATGTTTTCCTTGATGAAGAGATTGATCATCAATACTACAATGGTTATTGCAACAACATTTTATGGCCTTTGTTTCATTACCTTGGCCTTCCTCAAGAAGATCGTCTTGCAGTTATCATCCTTCTCTCCTACAGAGATGTGGAAAAAATCGAAAACCTCCAATTCCCTTCATCTTTTCATCTCCACATAAAAAGCCCTAAGTTCAAGTTGGGCTAG 360 40.28 MSSGGLVSALLGVNELFEMRWIGWAGVNVPDKVGQKALSEALAEKRCIHVFLDEEIDHQYYNGYCNNILWPLFHYLGLPQEDRLAVIILLSYRDVEKIENLQFPSSFHLHIKSPKFKLG 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23809725 23810398 + Lag0035544.1 Lac3g2016 602438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2016 119 Pfam Glycosyltransferase family 20 1 81 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lac3g2016 119 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 2 83 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lac3g2016 119 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 2 76 - -
Lac3g2016 119 Gene3D Glycogen Phosphorylase B; 1 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2016 K16055 - - csv:101204478 159.073
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g2016 Lac-Chr3:23809725 Lac10g1001 Lac-Chr10:8040725 4.10E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac11g1990 . 22 573 Trehalose Biosynthesis Gene Families AT4G24040 57.5 9.1e-193 671.0
Lac12g0751 . 1 854 Trehalose Biosynthesis Gene Families AT1G06410 78.0 0.0e+00 1387.5
Lac1g3435 . 1 800 Trehalose Biosynthesis Gene Families AT1G06410 72.9 0.0e+00 1251.5
Lac5g0203 . 77 920 Trehalose Biosynthesis Gene Families AT1G06410 66.5 0.0e+00 1151.3
Lac13g1298 . 1 849 Trehalose Biosynthesis Gene Families AT1G06410 64.3 0.0e+00 1137.5
Lac13g0218 . 147 962 Trehalose Biosynthesis Gene Families AT1G06410 63.8 0.0e+00 1086.2
Lac3g0693 . 1 847 Trehalose Biosynthesis Gene Families AT1G06410 59.1 2.3e-300 1028.9
Lac2g1136 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 65.9 1.6e-248 856.3
Lac10g1001 . 83 691 Trehalose Biosynthesis Gene Families AT1G16980 64.3 5.5e-241 831.2
Lac13g0218 . 147 979 Trehalose Biosynthesis Gene Families AT1G23870 75.4 0.0e+00 1328.9
Lac3g0693 . 1 838 Trehalose Biosynthesis Gene Families AT1G23870 67.8 0.0e+00 1206.8
Lac13g1298 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 62.3 0.0e+00 1120.1
Lac5g0203 . 77 919 Trehalose Biosynthesis Gene Families AT1G23870 63.1 0.0e+00 1114.0
Lac12g0751 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1099.3
Lac1g3435 . 5 801 Trehalose Biosynthesis Gene Families AT1G23870 59.5 1.3e-298 1023.1
Lac13g0218 . 147 979 Trehalose Biosynthesis Gene Families AT1G60140 73.7 0.0e+00 1308.9
Lac3g0693 . 1 840 Trehalose Biosynthesis Gene Families AT1G60140 67.5 0.0e+00 1204.1
Lac13g1298 . 1 858 Trehalose Biosynthesis Gene Families AT1G60140 61.5 0.0e+00 1086.6
Lac5g0203 . 77 924 Trehalose Biosynthesis Gene Families AT1G60140 60.6 0.0e+00 1085.1
Lac12g0751 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.0 1.6e-312 1069.3
Lac1g3435 . 6 805 Trehalose Biosynthesis Gene Families AT1G60140 58.8 9.0e-292 1000.3
Lac13g1298 . 1 851 Trehalose Biosynthesis Gene Families AT1G68020 79.5 0.0e+00 1411.0
Lac5g0203 . 77 921 Trehalose Biosynthesis Gene Families AT1G68020 72.1 0.0e+00 1271.5
Lac12g0751 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.2 0.0e+00 1144.0
Lac13g0218 . 147 960 Trehalose Biosynthesis Gene Families AT1G68020 65.0 0.0e+00 1109.0
Lac3g0693 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1092.8
Lac1g3435 . 2 801 Trehalose Biosynthesis Gene Families AT1G68020 62.0 0.0e+00 1075.8
Lac13g0218 . 147 979 Trehalose Biosynthesis Gene Families AT1G70290 69.0 0.0e+00 1174.8
Lac3g0693 . 1 838 Trehalose Biosynthesis Gene Families AT1G70290 64.8 0.0e+00 1106.3
Lac13g1298 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 58.2 1.2e-293 1006.5
Lac12g0751 . 1 856 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.1e-291 1000.0
Lac5g0203 . 77 938 Trehalose Biosynthesis Gene Families AT1G70290 57.0 8.2e-287 983.8
Lac1g3435 . 6 804 Trehalose Biosynthesis Gene Families AT1G70290 55.9 9.2e-270 927.2
Lac2g1136 . 1 927 Trehalose Biosynthesis Gene Families AT1G78580 78.1 0.0e+00 1473.4
Lac10g1001 . 1 925 Trehalose Biosynthesis Gene Families AT1G78580 73.7 0.0e+00 1368.6
Lac3g2016 . 1 85 Trehalose Biosynthesis Gene Families AT1G78580 89.4 3.9e-38 157.9
Lac13g0218 . 153 962 Trehalose Biosynthesis Gene Families AT2G18700 61.9 6.0e-312 1067.4
Lac5g0203 . 77 920 Trehalose Biosynthesis Gene Families AT2G18700 58.6 4.9e-298 1021.1
Lac3g0693 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.4 3.5e-296 1015.0
Lac12g0751 . 1 841 Trehalose Biosynthesis Gene Families AT2G18700 57.4 1.5e-291 999.6
Lac13g1298 . 1 849 Trehalose Biosynthesis Gene Families AT2G18700 57.0 4.6e-288 988.0
Lac1g3435 . 1 797 Trehalose Biosynthesis Gene Families AT2G18700 58.3 9.3e-281 963.8
Lac5g0203 . 77 915 Trehalose Biosynthesis Gene Families AT4G17770 79.7 0.0e+00 1384.0
Lac13g1298 . 1 847 Trehalose Biosynthesis Gene Families AT4G17770 71.4 0.0e+00 1264.2
Lac12g0751 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.5 0.0e+00 1161.0
Lac13g0218 . 148 962 Trehalose Biosynthesis Gene Families AT4G17770 65.1 0.0e+00 1135.6
Lac3g0693 . 1 834 Trehalose Biosynthesis Gene Families AT4G17770 61.8 0.0e+00 1091.6
Lac1g3435 . 3 793 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1078.2
Lac2g1136 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.2 4.2e-304 1041.2
Lac10g1001 . 87 919 Trehalose Biosynthesis Gene Families AT4G27550 59.8 5.3e-291 997.7
Lac2g1136 . 1 927 Trehalose Biosynthesis Gene Families AT1G78580 78.1 0.0e+00 1473.4
Lac10g1001 . 1 925 Trehalose Biosynthesis Gene Families AT1G78580 73.7 0.0e+00 1368.6
Lac3g2016 . 1 85 Trehalose Biosynthesis Gene Families AT1G78580 89.4 3.9e-38 157.9
Lac2g1136 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 65.9 1.6e-248 856.3
Lac10g1001 . 83 691 Trehalose Biosynthesis Gene Families AT1G16980 64.3 5.5e-241 831.2
Lac2g1136 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.0 3.0e-193 672.9
Lac10g1001 . 88 606 Trehalose Biosynthesis Gene Families AT1G17000 61.1 1.7e-188 657.1
Lac2g1136 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.2 4.2e-304 1041.2
Lac10g1001 . 87 919 Trehalose Biosynthesis Gene Families AT4G27550 59.8 5.3e-291 997.7
Lac5g0203 . 77 915 Trehalose Biosynthesis Gene Families AT4G17770 79.7 0.0e+00 1384.0
Lac13g1298 . 1 847 Trehalose Biosynthesis Gene Families AT4G17770 71.4 0.0e+00 1264.2
Lac12g0751 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.5 0.0e+00 1161.0
Lac13g0218 . 148 962 Trehalose Biosynthesis Gene Families AT4G17770 65.1 0.0e+00 1135.6
Lac3g0693 . 1 834 Trehalose Biosynthesis Gene Families AT4G17770 61.8 0.0e+00 1091.6
Lac1g3435 . 3 793 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1078.2
Lac13g1298 . 1 851 Trehalose Biosynthesis Gene Families AT1G68020 79.5 0.0e+00 1411.0
Lac5g0203 . 77 921 Trehalose Biosynthesis Gene Families AT1G68020 72.1 0.0e+00 1271.5
Lac12g0751 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.2 0.0e+00 1144.0
Lac13g0218 . 147 960 Trehalose Biosynthesis Gene Families AT1G68020 65.0 0.0e+00 1109.0
Lac3g0693 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1092.8
Lac1g3435 . 2 801 Trehalose Biosynthesis Gene Families AT1G68020 62.0 0.0e+00 1075.8
Lac12g0751 . 1 854 Trehalose Biosynthesis Gene Families AT1G06410 78.0 0.0e+00 1387.5
Lac1g3435 . 1 800 Trehalose Biosynthesis Gene Families AT1G06410 72.9 0.0e+00 1251.5
Lac5g0203 . 77 920 Trehalose Biosynthesis Gene Families AT1G06410 66.5 0.0e+00 1151.3
Lac13g1298 . 1 849 Trehalose Biosynthesis Gene Families AT1G06410 64.3 0.0e+00 1137.5
Lac13g0218 . 147 962 Trehalose Biosynthesis Gene Families AT1G06410 63.8 0.0e+00 1086.2
Lac3g0693 . 1 847 Trehalose Biosynthesis Gene Families AT1G06410 59.1 2.3e-300 1028.9
Lac13g0218 . 147 979 Trehalose Biosynthesis Gene Families AT1G70290 69.0 0.0e+00 1174.8
Lac3g0693 . 1 838 Trehalose Biosynthesis Gene Families AT1G70290 64.8 0.0e+00 1106.3
Lac13g1298 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 58.2 1.2e-293 1006.5
Lac12g0751 . 1 856 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.1e-291 1000.0
Lac5g0203 . 77 938 Trehalose Biosynthesis Gene Families AT1G70290 57.0 8.2e-287 983.8
Lac1g3435 . 6 804 Trehalose Biosynthesis Gene Families AT1G70290 55.9 9.2e-270 927.2
Lac13g0218 . 147 979 Trehalose Biosynthesis Gene Families AT1G23870 75.4 0.0e+00 1328.9
Lac3g0693 . 1 838 Trehalose Biosynthesis Gene Families AT1G23870 67.8 0.0e+00 1206.8
Lac13g1298 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 62.3 0.0e+00 1120.1
Lac5g0203 . 77 919 Trehalose Biosynthesis Gene Families AT1G23870 63.1 0.0e+00 1114.0
Lac12g0751 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1099.3
Lac1g3435 . 5 801 Trehalose Biosynthesis Gene Families AT1G23870 59.5 1.3e-298 1023.1
Lac13g0218 . 147 979 Trehalose Biosynthesis Gene Families AT1G60140 73.7 0.0e+00 1308.9
Lac3g0693 . 1 840 Trehalose Biosynthesis Gene Families AT1G60140 67.5 0.0e+00 1204.1
Lac13g1298 . 1 858 Trehalose Biosynthesis Gene Families AT1G60140 61.5 0.0e+00 1086.6
Lac5g0203 . 77 924 Trehalose Biosynthesis Gene Families AT1G60140 60.6 0.0e+00 1085.1
Lac12g0751 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.0 1.6e-312 1069.3
Lac1g3435 . 6 805 Trehalose Biosynthesis Gene Families AT1G60140 58.8 9.0e-292 1000.3
Lac13g0218 . 153 962 Trehalose Biosynthesis Gene Families AT2G18700 61.9 6.0e-312 1067.4
Lac5g0203 . 77 920 Trehalose Biosynthesis Gene Families AT2G18700 58.6 4.9e-298 1021.1
Lac3g0693 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.4 3.5e-296 1015.0
Lac12g0751 . 1 841 Trehalose Biosynthesis Gene Families AT2G18700 57.4 1.5e-291 999.6
Lac13g1298 . 1 849 Trehalose Biosynthesis Gene Families AT2G18700 57.0 4.6e-288 988.0
Lac1g3435 . 1 797 Trehalose Biosynthesis Gene Families AT2G18700 58.3 9.3e-281 963.8
Lac11g1990 . 22 573 Trehalose Biosynthesis Gene Families AT4G24040 57.5 9.1e-193 671.0