Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g2041 | ATGGAAGATTCCTCCCAATCAGCCGCTGATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTCCACGTTCCGATCACCAAGCTCTACGAGCTCCCCACCTCCCCCGAGCATCTCTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGCGCCCTTCTCGGCGGCGCCAGGGGCTCCCTCCAGGGCCTCAGGGCCGCCGAGCCCGGCGACACCATGAAGCTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTCGGCCGCAGGGCTGGGAACTCGCTTGGGATCCTTGGCTTGATTTTTGCCGGTTTGGAAAGCGGGGTTATTCATTTGAGAGGTTCTGATGATGTCTTGAATAGTATTGTCGCCGGATTGGGGACTGGCGCTCTTTACAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCCGGTGCCATTGGAGGGATTGCTGCTGCAGCTGCAGTTGCGGGCAAGCAGGCAGTTAAGAGATATGTGCCAATATAG | 552 | 59.6 | MEDSSQSAADRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALLGGARGSLQGLRAAEPGDTMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI | 183 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 24244592 | 24245143 | - | Lag0035569.1 | Lac3g2041 | 602463 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g2041 | 183 | PANTHER | TIM23 | 32 | 170 | IPR045238 | GO:0005744(PANTHER)|GO:0008320(PANTHER)|GO:0022857(InterPro)|GO:0030150(PANTHER)|GO:0031305(PANTHER) | |
| Lac3g2041 | 183 | Pfam | Tim17/Tim22/Tim23/Pmp24 family | 57 | 166 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g2041 | Lac-Chr3:24244592 | Lac4g2996 | Lac-Chr4:48187090 | 2.10E-49 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac3g2041 | K17794 | - | csv:116401801 | 291.197 |