Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2086 ATGGCCGGAATCCCCTCTGAGGGGTTGGGGGATGATTTCTTCGAGCAGATTCTGTCGGTGCCGCCGGCTTACGGCGGCGGAGGTGGCGTCGATGTGGTGTCCATGCCGATGGGGTTGCAACTTGGGTCCGGCGGCGGCGGCGGCGGTGGCGGCGACGGTGGGTTGAGAGGGATGGGGTTGCAAGGAGGGATGGCTATGCCTTTGGGGCTGAATTTAGAACAAGGGTTTTTGAGACAAGAGAGGTTTAGAGAAGAGCTTGATGCCCATAATAATAATACCACTAATAATGCTTCCTCTTCTTCAACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCGGTGCAGCACATGACCAGCTTGTTTCCGACCTTTGGACATTTGCAGACTCAACCACTCCGGCCACCGCCGCCCTTACATCTCCACCAGTCCTTTCATAATCAGACAACTCCGGGGACGGTTGCTGCTGTACCACAACCACCGCAAGTTCGTCCAAGAGTTCGAGCAAGACGAGGGCAAGCGACCGATCCTCACAGTATTGCAGAAAGGTTGCGTCGAGAAAGAATTGCAGAAAGAATGAAGGCCTTGCAAGAGTTGGTTCCTAGTTGCAATAAGACTGATAGGGCGGCAATGCTCGACGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGCAGACTAGGCGGGGCGGGTGCGGTGGCTCAACTTGTAGCCGATGTGCCCTTATCATCAGTTGAGGGAGAAGGCATAGAGAGTGGCAGCAATCAGCAAGCATGGGAAAAGTGGTCAAGTGATGGCACAGAGCAACAAGTAGCCAAATTGATGGAAGAAGATGTGGGAGCTGCCATGCAATTTCTACAATCTAAAGCTCTATGCATTATGCCCATCTCATTAGCCTCAGCAATTTTCAGGACACACCAAGCAGATCCACCCATCATAGTCAAGCCAGAAATGAACACTCCCTAG 984 51.22 MAGIPSEGLGDDFFEQILSVPPAYGGGGGVDVVSMPMGLQLGSGGGGGGGGDGGLRGMGLQGGMAMPLGLNLEQGFLRQERFREELDAHNNNTTNNASSSSTASSGITERDSSVQHMTSLFPTFGHLQTQPLRPPPPLHLHQSFHNQTTPGTVAAVPQPPQVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGSNQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPPIIVKPEMNTP 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25480451 25486892 + Lag0035614.1 Lac3g2086 602508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2086 327 SMART finulus 178 227 IPR011598 GO:0046983(InterPro)
Lac3g2086 327 MobiDBLite consensus disorder prediction 88 112 - -
Lac3g2086 327 Pfam Helix-loop-helix DNA-binding domain 177 222 IPR011598 GO:0046983(InterPro)
Lac3g2086 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 231 IPR036638 GO:0046983(InterPro)
Lac3g2086 327 Gene3D - 165 222 IPR036638 GO:0046983(InterPro)
Lac3g2086 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983(InterPro)
Lac3g2086 327 MobiDBLite consensus disorder prediction 141 155 - -
Lac3g2086 327 MobiDBLite consensus disorder prediction 125 176 - -
Lac3g2086 327 MobiDBLite consensus disorder prediction 89 112 - -
Lac3g2086 327 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 89 306 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac3g2086 327 FunFam Basic helix-loop-helix transcription factor 167 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2712 Lac-Chr11:42948275 Lac3g2086 Lac-Chr3:25480451 5.10E-19 dispersed
Lac3g2086 Lac-Chr3:25480451 Lac6g2849 Lac-Chr6:46113787 1.20E-42 dispersed
Lac3g2086 Lac-Chr3:25480451 Lac4g2224 Lac-Chr4:41900211 5.20E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23655 PF00010 HLH 7.30E-08 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2086 - - - 0.0