Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2146 ATGAAACACATTTTCAAGAAATTTCACATAGGAAGCAATCACGACCCCAATCGGACCAACGACAATCCGTCGCCTGTAGCAGCGTCATCGTCGTCACCATGTGTTTCTGACAATCGTCCTGCAACTGCTCCGGGGCAGACTTCCGGCAACTCTCCGTCCAGTCCTTCGTCGTCGCCGTCACTGGCAACAACTACTCCAGTGGGTGGAACTGTGACTCCGGTTTCGGTGGCTCCGAATCGCTCTGATTACTTTTCTTCAGAGGAGGAGTTTCAGGTTCAGCTTGCCCTAGCTATTAGCGCCTCAAATTCTGACTTCCGGGATGATCCGGAGAAGGATCAAATTCGAGCTGCGACGCTTTTGAGCTTGGGTAATCATCGGATTGATTCCACTGCCAGGGACCAGGAAGATGCTGCCGAGGCGCTCTCCAGGCAATATTGGGAATACAATCTGCTTGACTATGAAGAAAAAGTGGTCAATGGGTTTTATGATGTCCTCTCTACGGATTCAGCGGTCCAAGGAAAAATTCCATCTTTATCTGATATTGAAGCAAGCTTTGGTAGTTCTGGTTTTGAAGTCGTGATGGTCAATATGACTGTTGATCCTGCACTAGAAGAGCTAGTGCAAATTGCTCAATGTATTGCAGATTGCCCTGGCACCGAGGTCAGAGTGTTGGTTCAAAGGATTGCTGAGCTTGTTATGGGACACATGGGCGGACCTGTAAAGGACGCCAATTTTATGCTAGCAAGGTGGATGGAAAGAAGCACAGAGTTAAGGACTTCTCTTCACACCAGTGTATTGCCTATTGGTTCCATTAATATTGGCCTCTCAAGACATCGTGCTTTGCTTTTCAAGGTGTTAGCTGACAGTATCAAGATGCCTTGTAGACTTGTTAAGGGTAGTCACTATACTGGTGTTGAAGAAGATGCTGTCAACATTATAAAGTTGGAGGATGACAGGGAGTTTTTGGTTGATCTAATGGCAGCTCCTGGAACACTTATACCAGCAGACGTATTAAATGCAAAGGACACTACTACCTCTAAACCTTACAACCCTAAAGTAAGCAAAATCCCTTCTCTCCACTACTCCAATGATGTTGGAATTTCTTCCGTGAAACCAACATCATCACTTGAAGAAGGCAGCAGTCAAAACTTTGAAGCAGAGGCCAGCTCCCTGATGGATGGGAAACTGAGCTATGGAAGGACAGAGTCTGTGCCATCAAGCTCAGGCACGGGAACTTCTCGATACAAAGGGCCCCATTCAGGTGATAGTAATGCTAGACTGAATGTCAATGTAGTTCCATTTGGTCAAAGCTCGGAGGATTCCAAAAATCTTTTTGCAGATCTTAATCCTTTCCAAATAAAAGGAACTGGAAAAAGTTTCATTCTTAACAAATCCTCTGATAATAAAATTGAGGAGCTCCAGAAACCTACTATTGGGCATCCTCCTGTACCGTTGTGGAAAAATCGGGTTGCTTTCAATGCACCCAAGAAAAAAGAGTATGATTATATGGAGGGTCGTTTTCCAAGAATTGGTCGTGGATCTAATGAACCTAATATGTCATTGTCTTCTTCTGCCAACTCTACTGCCTCTGAAAATTTCAATCTTGGTGGTTCAGAAACATCCATTGACTCAAGTGTATCGATTAGAAGTGCTGAAGTTGGAAGTTCATCTAATATGAACTCACGGTTGACATCTACAATGATTGAGCCTAATATTTTGCCTTTGATCGAAGAACAGAACAGAAAGGCCAATGGAGAATATTCTGGAAGTATAGACATGCAGGACGAAAAGATTGATGCTGTTGATGGGCACGATAGTTTAATCAGATTTGATAACCGTAGAAAGTTCACATATGACCGATCTGTTGGGACCAATCTGATACTGAAGGATCCGGGAAGTCCCATCCTGTCGATTGATCCAAGTTCAAATAGGTTTGAGCAAGTTTATGACGATGTGGATGTAGGCCAATGTGAAATCCAATGGGAGGACCTCATTATTGGTGAAAGGATTGGACTAGGTTCTTATGGAGAAGTCTACCATGCTGATTGGAATGGCACCGAGGTTGCTGTGAAGAAATTCTTAGACCAGGATTTTTCTGGCGCTGCTTTAGCTGAGTTCAAAAGAGAAGTCCTGATAATGCGGCAGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTCACTCGTCCTCCTAATCTTTCCATTGTTACCGAGTTTCTTCCAAGAGGAAGCTTGTACCGTATTATTCATCGCCCACATTGTCAAATTGATGAAAAGCGCAGAATAAAAATGGCCCTTGATGTGGCAAGGGGCATGAATTGCTTGCATGCAAGCAATCCAACAATTGTTCACCGAGATCTGAAGTCACCGAATCTTTTGGTTGATAAGAACTGGAATGTGAAGGTATCAGATTTTGGGTTGTCACGCCTGAAGCACCACACATTTTTGTCCTCCAAATCAACTGGAGGAACGCCCGAGTGGATGGCACCAGAAGTTCTCCGGAATGAGCCGTCAAATGAGAAGTGCGATGTTTATAGCTTTGGAATCATTCTATGGGAACTTGCTACATTGAGGTTGCCTTGGAGTGGGATGAATCCTATGCAAGTTGTTGGTGCAGTAGGTTTCCAGAATCGACGACTCGAAATACCCAAGGAAGTGGATCCCACGGTTGCAAGGATAATCTGGGAATGCTGGCAAACCGATCCGAACTTGCGCCCCTCGTTTGCACAATTAGCCAATTTTCTGAAGCCACTGCAGCGGCTCGTGTTACCACCGCATTCAGACCAGCCAAGTTCATCAGTGCTGCAAGAGATCTCTTCGACGGTACAAATGGTGAACCATGGAGTGAGTGGTTCGTTATTGATCGAGAAAATGAAGGTGGAAATGCAGAAATTCTTCGGTTTAGCGATTGAAGAGAAGAAAAAGCTATGGCAGAGAGAAGGAGATGTAGAAGGATTTGGACAAGCTTTCGTTGTGGTTGTGACGGAGATTCTTCGCATTAGAGTCGATTTGGCCGGATTTGACGGAGATTCTTAG 3039 44.52 MKHIFKKFHIGSNHDPNRTNDNPSPVAASSSSPCVSDNRPATAPGQTSGNSPSSPSSSPSLATTTPVGGTVTPVSVAPNRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAATLLSLGNHRIDSTARDQEDAAEALSRQYWEYNLLDYEEKVVNGFYDVLSTDSAVQGKIPSLSDIEASFGSSGFEVVMVNMTVDPALEELVQIAQCIADCPGTEVRVLVQRIAELVMGHMGGPVKDANFMLARWMERSTELRTSLHTSVLPIGSINIGLSRHRALLFKVLADSIKMPCRLVKGSHYTGVEEDAVNIIKLEDDREFLVDLMAAPGTLIPADVLNAKDTTTSKPYNPKVSKIPSLHYSNDVGISSVKPTSSLEEGSSQNFEAEASSLMDGKLSYGRTESVPSSSGTGTSRYKGPHSGDSNARLNVNVVPFGQSSEDSKNLFADLNPFQIKGTGKSFILNKSSDNKIEELQKPTIGHPPVPLWKNRVAFNAPKKKEYDYMEGRFPRIGRGSNEPNMSLSSSANSTASENFNLGGSETSIDSSVSIRSAEVGSSSNMNSRLTSTMIEPNILPLIEEQNRKANGEYSGSIDMQDEKIDAVDGHDSLIRFDNRRKFTYDRSVGTNLILKDPGSPILSIDPSSNRFEQVYDDVDVGQCEIQWEDLIIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPHCQIDEKRRIKMALDVARGMNCLHASNPTIVHRDLKSPNLLVDKNWNVKVSDFGLSRLKHHTFLSSKSTGGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPTVARIIWECWQTDPNLRPSFAQLANFLKPLQRLVLPPHSDQPSSSVLQEISSTVQMVNHGVSGSLLIEKMKVEMQKFFGLAIEEKKKLWQREGDVEGFGQAFVVVVTEILRIRVDLAGFDGDS 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26804401 26822684 + Lag0035674.1 Lac3g2146 602568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2146 1012 Pfam Ethylene-responsive protein kinase Le-CTR1 138 333 - -
Lac3g2146 1012 ProSitePatterns Protein kinases ATP-binding region signature. 670 692 IPR017441 GO:0005524(InterPro)
Lac3g2146 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g2146 1012 MobiDBLite consensus disorder prediction 397 426 - -
Lac3g2146 1012 MobiDBLite consensus disorder prediction 1 74 - -
Lac3g2146 1012 MobiDBLite consensus disorder prediction 370 388 - -
Lac3g2146 1012 CDD STKc_MAP3K-like 670 916 - -
Lac3g2146 1012 SUPERFAMILY Protein kinase-like (PK-like) 655 945 IPR011009 -
Lac3g2146 1012 PANTHER SERINE-THREONINE PROTEIN KINASE 48 917 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac3g2146 1012 ProSiteProfiles Protein kinase domain profile. 664 916 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g2146 1012 MobiDBLite consensus disorder prediction 15 74 - -
Lac3g2146 1012 MobiDBLite consensus disorder prediction 515 530 - -
Lac3g2146 1012 MobiDBLite consensus disorder prediction 511 530 - -
Lac3g2146 1012 Gene3D Phosphorylase Kinase; domain 1 657 741 - -
Lac3g2146 1012 FunFam Serine/threonine-protein kinase isoform 1 655 742 - -
Lac3g2146 1012 PRINTS Tyrosine kinase catalytic domain signature 738 751 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g2146 1012 PRINTS Tyrosine kinase catalytic domain signature 824 834 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g2146 1012 PRINTS Tyrosine kinase catalytic domain signature 777 795 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g2146 1012 PRINTS Tyrosine kinase catalytic domain signature 843 865 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g2146 1012 PRINTS Tyrosine kinase catalytic domain signature 887 909 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g2146 1012 MobiDBLite consensus disorder prediction 370 389 - -
Lac3g2146 1012 FunFam PAS domain-containing protein tyrosine kinase family protein 742 951 - -
Lac3g2146 1012 MobiDBLite consensus disorder prediction 400 426 - -
Lac3g2146 1012 Pfam Protein tyrosine and serine/threonine kinase 666 916 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g2146 1012 SMART serkin_6 664 916 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g2146 1012 Gene3D Transferase(Phosphotransferase) domain 1 743 923 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0906 Lac-Chr10:7224005 Lac3g2146 Lac-Chr3:26804401 3.50E-19 dispersed
Lac10g2917 Lac-Chr10:43761839 Lac3g2146 Lac-Chr3:26804401 1.70E-125 dispersed
Lac11g0955 Lac-Chr11:10528968 Lac3g2146 Lac-Chr3:26804401 8.80E-98 dispersed
Lac2g0788 Lac-Chr2:6100163 Lac3g2146 Lac-Chr3:26804401 2.30E-121 dispersed
Lac3g2146 Lac-Chr3:26804401 Lac9g2194 Lac-Chr9:41399966 1.60E-74 dispersed
Lac9g2366 Lac-Chr9:42860946 Lac3g2146 Lac-Chr3:26804401 2.60E-25 dispersed
Lac3g2146 Lac-Chr3:26804401 Lac2g0452 Lac-Chr2:3325129 1.40E-190 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86101 PF07714 PK_Tyr_Ser-Thr 6.40E-63 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2146 - - - 0.0