Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2189 ATGGACGATACCGATTCATTCAATGCTTCCTCCACTCTTCTTCACCATCCAGATTTCTCTCACTATGTTGAAATTGATCCCACTCGCAGATATGGAAGATACGATCAAATCCTCGGCAAAGGAGCTTCCAAGACAGTTTACAGAGCATTTGATGAGTTTGAAGGGATTGAAGTTGCTTGGAACCAGGTCAAACTCTGTAACTTCCTTCAATGCCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTTTTAAAGACATTGAAACATAAGAACATCATGAAATTCTATACTTCTTGGGTCGACACTGCAAATAGGAACATCAACTTTGTAACTGAAATGTTCACTTCTGGGACTTTGAGGCAGTATAGGCTAAAGCATAGGAGAGTTAATGTTAGAGCAGTGAAGCGATGGTGTAGACAGATCTTGAGGGGTCTTCTCTATTTACACAGCCAAAACCCCCCTGTGATCCACAGAGATCTCAAGTGTGACAACATTTTTGTTAATGGTAACCAAGGAGAAATTAAAATTGGAGATCTTGGTCTTGCTGCTATCCTCCGGAAATCGCATGCTGATCATTGCGTCGGGACACCAGAGTTCATGGCTCCTGAAGTATATGAAGAGGCATATAATGAATTGGTAGACATTTATTCTTTTGGGATGTGTGTTTTGGAGATGGTTACATTTGAATATCCATATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAATTTCTGGGAAAAAACCAGATGCCTTGTATAAAGTGAAGGATCCGAGCATGCGGCAATTTGTCGAGAAATGCTTGGCACCAGTCTCTTGTAGACTTTCGGCAAGGGAGCTTTTGAGTGACCCTTTTCTCCAAATTGATGATTGTGAAAGCAAGTCAAAACTTTCAGATTTTCGGGAAGAACTGGATGGTATTGCTTCTACTACAGCACAACCTTTCCTTGAACAAGAGAAAAGTTTGAGCTCGATTAATTACAGTTTGGAGGCCTCAGATGAATGGAGGTATCTTACAGTTCCGACTGTACCCGATGGTATCGAACTTTTTGAGGACGAGGATAATGACCAATTGGAAAATCTTGATAACAGTATTAAGGGGAAGATAAGAGAAGATGGCAGCATTGTTTTAAGACTTAGGATTGCAGAGAAAGAAGGGCATATTCGAAACATATATTTCCCATTTGACACCAAGAATGATACGGCATTGACAGTTGCCACTGAAATGATAGCAGAACTTGATATTACCGACCAAGATGTGATCAAGATAGCTGAAAAAATTGATGGGGAAATCGCTTCCTTGGTACCGGAGTGGAAGCCGGGGCCTGGCATAGATGAAACACCTCGCATCTCCTATGATGGTGGTTGTCAAAGCTACGATGCTTCTAACCATCCATCTGAGAATCATTTGATAGGGAATAAGCGAAATGGAGCTAAACTCTATCAGATTTTAAACTGCAGCACAGATGAATGTGCTACAGCAGACAGACATTTCGAGCAGGTCTCCCTCGAAGCAGATCAGCCTCCACAGCCTCTAGTAGATAGCACACCAAAAGTGTCAAGCCAGCATTATCAGCAAAACTCAGTCCATGAAAACCAAGCTCTTGGTTCTCGTAGTTTTAGGCGAAGTCATTCTGATCAAGATCAACATTACAAGAAAACAGGCCAATCAATCGCTGTTGGGGATAACAAAGAAAAGTTACTTGATAGCAAAGCCACTGTCATTGCAAGAACTTCACTCAGAAGCTTACTGGGTTCCCGATCGCTGTCTACGGTTTCGTCCTATTGTGAAGATAAATTTGCATCTCAAATCCATTGGGAAATTAGATGGCTTTGGAATTGA 1851 41.27 MDDTDSFNASSTLLHHPDFSHYVEIDPTRRYGRYDQILGKGASKTVYRAFDEFEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHRRVNVRAVKRWCRQILRGLLYLHSQNPPVIHRDLKCDNIFVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPVQIYKKVISGKKPDALYKVKDPSMRQFVEKCLAPVSCRLSARELLSDPFLQIDDCESKSKLSDFREELDGIASTTAQPFLEQEKSLSSINYSLEASDEWRYLTVPTVPDGIELFEDEDNDQLENLDNSIKGKIREDGSIVLRLRIAEKEGHIRNIYFPFDTKNDTALTVATEMIAELDITDQDVIKIAEKIDGEIASLVPEWKPGPGIDETPRISYDGGCQSYDASNHPSENHLIGNKRNGAKLYQILNCSTDECATADRHFEQVSLEADQPPQPLVDSTPKVSSQHYQQNSVHENQALGSRSFRRSHSDQDQHYKKTGQSIAVGDNKEKLLDSKATVIARTSLRSLLGSRSLSTVSSYCEDKFASQIHWEIRWLWN 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28432246 28434917 - Lag0035717.1 Lac3g2189 602611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2189 616 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
Lac3g2189 616 FunFam Probable serine/threonine-protein kinase WNK1 17 113 - -
Lac3g2189 616 ProSiteProfiles Protein kinase domain profile. 32 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g2189 616 CDD STKc_WNK 30 289 - -
Lac3g2189 616 MobiDBLite consensus disorder prediction 507 561 - -
Lac3g2189 616 Gene3D - 376 475 - -
Lac3g2189 616 MobiDBLite consensus disorder prediction 516 543 - -
Lac3g2189 616 Gene3D Transferase(Phosphotransferase) domain 1 115 295 - -
Lac3g2189 616 FunFam probable serine/threonine-protein kinase WNK9 115 294 - -
Lac3g2189 616 SUPERFAMILY Protein kinase-like (PK-like) 25 290 IPR011009 -
Lac3g2189 616 SMART serkin_6 32 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g2189 616 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 21 567 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lac3g2189 616 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 379 434 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Lac3g2189 616 Pfam Protein kinase domain 35 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g2189 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2279 Lac-Chr12:39919600 Lac3g2189 Lac-Chr3:28432246 1.00E-187 dispersed
Lac3g2189 Lac-Chr3:28432246 Lac6g2741 Lac-Chr6:45131437 1.30E-204 dispersed
Lac1g1053 Lac-Chr1:27521483 Lac3g2189 Lac-Chr3:28432246 2.70E-08 wgd
Lac3g2189 Lac-Chr3:28432246 Lac5g0974 Lac-Chr5:14935619 9.20E-97 wgd
Lac3g2189 Lac-Chr3:28432246 Lac8g1174 Lac-Chr8:24998399 4.60E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86102 PF00069 Pkinase 6.80E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2189 K08867 - csv:101222641 1004.97