Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2269 ATGGATCCCCGCAACGACGCCGTTTTCCCCGACGAAGACCTCGAGGACGACGAGGAATCCCTCGACGACGACGACGACGAAGAGGAGGAGGAATTGAACGACGAACCTTCCCCTTCCACTTCCTCCGCCGGCGCCACCGTTGTTCCTTCTGTTTCCGCCCTTGTCACCGTCGCCACTCCCGGCACCACCGACCGTCCCGTCGCCCTTGTTCCTCCCCCTTCGATCGCCTCCATCTCCTCCGCCGATCTGATCCGCCAGCGCCTCGAGACCGCCGCCGCCGAGCCTTTGACCTTGCAGGGCGAGAAGAAGCCCTTGGATGAGTCCAGGAAGTTGTTTCAACGCCTCTGGACCGATGAGGATGAGATCGAGCTCTTGCAGGGGTTTTTGGATTACACGATGCAGCGGGGTACCACTCACCATCATCAGAACGATACGGCCTTGTTCTATGACCAGATCAAGTCCAAATTACAGCTCGATTTTAACAAGAATCAGCTCGTCGAGAAGCTTAGGAGGTTGAAGAAGAAGTACCGTAACGTTATCGGTAAGATTAGCTCTGGTAAGGAGTTCAATTTCAAAAGCCCTCACGATCAGGCTACGTTCGAGATCTCTCGCAAGATCTGGAGCACTACCGGCCGAATTGGAGTCGATGACAACGCTTTGGACGACGACGAGCCTCCTCCGCCTCCGTATGCCAACTACATGGACGCTAGAAACGAAGAGATGATGGCGAATTGCGCAGAGAAGAAACCGACGCCGACTCCGAAATCGCGGAAGCGTTCGCGGCCTGGATCGGGGTTGAGAATGGACGGGCCGCGTTCATCGAATGAGAATTTGAATAAAGAGAAGAACAGTACCTACAACAACAACAACAACGATAATGTCAATAACGTAGCGGTAGCAGGATTGATCGAGGAGACGGTGAGGAGCTGCCTGTCGCCTTTGTTTAAGGAATTGTTGAGTAGTTCCATGGGAGGAGGGCTCTGTGGAGGCAGAGGGTTCAGTGGGTTGGCTTTGCATCCAATTCCATTGAGCTTCGGTGGAGCTTCAATCAATTTCGGAGGTGGGGGAGAAATGTCGGATGAGAGGTGGAGGAAGCAGCAGATTTTGGAACTGGAGGTTTATTCGAAGAGGTTGGAGTTGGTTCAGGAACAAATTAAGACGGCATTAGAAGACTTGAGGTCCATGGGAGGCTGA 1194 53.6 MDPRNDAVFPDEDLEDDEESLDDDDDEEEEELNDEPSPSTSSAGATVVPSVSALVTVATPGTTDRPVALVPPPSIASISSADLIRQRLETAAAEPLTLQGEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTMQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKEFNFKSPHDQATFEISRKIWSTTGRIGVDDNALDDDEPPPPPYANYMDARNEEMMANCAEKKPTPTPKSRKRSRPGSGLRMDGPRSSNENLNKEKNSTYNNNNNDNVNNVAVAGLIEETVRSCLSPLFKELLSSSMGGGLCGGRGFSGLALHPIPLSFGGASINFGGGGEMSDERWRKQQILELEVYSKRLELVQEQIKTALEDLRSMGG 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30439181 30440374 - Lag0035797.1 Lac3g2269 602691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2269 397 MobiDBLite consensus disorder prediction 1 47 - -
Lac3g2269 397 MobiDBLite consensus disorder prediction 9 35 - -
Lac3g2269 397 MobiDBLite consensus disorder prediction 213 292 - -
Lac3g2269 397 Pfam Glabrous-enhancer-binding protein-like family, DBD domain 112 208 IPR053932 -
Lac3g2269 397 Coils Coil 162 182 - -
Lac3g2269 397 PANTHER BNAANNG10740D PROTEIN-RELATED 15 394 IPR007592 GO:0005634(PANTHER)|GO:0006355(InterPro)
Lac3g2269 397 Coils Coil 371 391 - -
Lac3g2269 397 MobiDBLite consensus disorder prediction 270 292 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2269 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0643 Lac-Chr12:6735556 Lac3g2269 Lac-Chr3:30439181 1.30E-14 dispersed
Lac3g2269 Lac-Chr3:30439181 Lac6g2739 Lac-Chr6:45122323 2.90E-35 dispersed
Lac3g2269 Lac-Chr3:30439181 Lac1g3258 Lac-Chr1:52450577 8.10E-22 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g2269 . 101 218 GeBP Transcription Factor Family AT3G04930 76.7 3.4e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004320 2 1 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23658 PF04504 DUF573 2.20E-34 CL0123 Lac TF