Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2293 ATGGGGTGTTTGGTTAGCCGAGAGGCGTCTTCTAGAAGTGTAGAGGCCCCTGTAGATAACGGGAAGAGGAATCAAATTACTGAGTCCCGTGTCCAAGTCGAGCGTGTTCAGGAAAAAGAACTAGAGCATGTTAGTGCTAATGTAGAGGAGCATGTAAATGTGAGCAAGGAGGAGGAGCAGAAGGCTGATGGGGGTCAGGATCGCCCACGAGCGGAGCGGAGAAAGTCGAGGAAGGTTCCAAGACCAACTAACTTGCCAAACCATTCCCAGGGGGAGCAAGTTGCTGCTGGATGGCCATCTTGGCTCACAGCAGTTTGTGGGGAGGCTCTCAATGGTTGGATTCCAAGGAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTACGGTTTGATAATCTGGAACCTGAAAGTGTGAAATTTATGGCTAGAGAGATTCTCATCCTTAGGAGATTAAATCACAATAATGTTGTGAAATTGGAGGGGTTGGTTACATCGCGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTACATGGAGCATGATTTAGCCGGTCTTGCTGCAAATCCATCAATCAAATTTACAGAATCTCAGGTTAAATGTTTCATGCAACAACTGCTATCTGGACTGGAACACTGTCACAATCGTCGTGTGCTTCACCGTGACATTAAAGGATCTAATCTGCTCATTGATAGTGGGGGAGTGCTTAAGATTGCTGACTTTGGATTAGCTTCTTTCTTTGATCCGAATCACAAGCACCCCATGACCAGTCGGGTAGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCTGAGTTATTAGCTGGAAGGCCTATTATGCCTGGCCGTACAGAGGTAGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAGTATTGGAAAAGGGCAAAGCTGCCAAATGCAACCTTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACATTTAAAGATTTCCCACCCTCTTCACTGCCTCTTATAGAAACGCTTCTTGCAATTGATCCAGTAGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGTTCTTCATGACAGAGCCTTTAGCTTGCAAACCCTCGAACCTCCCGAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGAGATGATGAAGCTCGGAGACTAAGAGCAGCTAATAAAGCCCAGGGAGATGGAGCGAAGAAAACACGCACACGTGTTAGGGCTATTCCTGCTCCTGAAGCCAATGCCGAAATACAAACAAATATCGATAGAAGGCGCTTAATTACACATGCAAATGCAAAGAGCAAAAGTGAAAAGTTCCCCCCACCACACCAGGATGGAGCGCTTGGCTTTACGCTAGGATATTCACGTCATATTGACCCATCTGGTGTTCCTCCCGACATACCATTCAGCTCGACGCTGTTCACTTATTCTAAGGAACCAGTCCAAGCCTGGTCTGGTCCACTGGTCCCTGGTGCTGGCACTGATGCTCCTGCTAGGCAGAAGAAGCATGTGGGAGGTAAAGGCAAGAAAATCATGGTCTAA 1695 45.49 MGCLVSREASSRSVEAPVDNGKRNQITESRVQVERVQEKELEHVSANVEEHVNVSKEEEQKADGGQDRPRAERRKSRKVPRPTNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETFKDFPPSSLPLIETLLAIDPVERKTATDALNSEFFMTEPLACKPSNLPKYPPSKEMDARRRDDEARRLRAANKAQGDGAKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPSGVPPDIPFSSTLFTYSKEPVQAWSGPLVPGAGTDAPARQKKHVGGKGKKIMV 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31237655 31250529 + Lag0035821.1 Lac3g2293 602715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2293 564 SUPERFAMILY Protein kinase-like (PK-like) 115 409 IPR011009 -
Lac3g2293 564 ProSiteProfiles Protein kinase domain profile. 121 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g2293 564 FunFam probable serine/threonine-protein kinase At1g54610 204 445 - -
Lac3g2293 564 FunFam probable serine/threonine-protein kinase At1g54610 108 203 - -
Lac3g2293 564 CDD STKc_CDK9_like 121 405 - -
Lac3g2293 564 PANTHER CELL DIVISION PROTEIN KINASE 120 405 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lac3g2293 564 SMART serkin_6 121 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g2293 564 Pfam Protein kinase domain 121 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g2293 564 MobiDBLite consensus disorder prediction 541 564 - -
Lac3g2293 564 MobiDBLite consensus disorder prediction 1 93 - -
Lac3g2293 564 MobiDBLite consensus disorder prediction 415 454 - -
Lac3g2293 564 Gene3D Phosphorylase Kinase; domain 1 108 203 - -
Lac3g2293 564 Gene3D Transferase(Phosphotransferase) domain 1 204 445 - -
Lac3g2293 564 MobiDBLite consensus disorder prediction 423 454 - -
Lac3g2293 564 MobiDBLite consensus disorder prediction 28 73 - -
Lac3g2293 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g2293 564 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g2293 Lac-Chr3:31237655 Lac5g2461 Lac-Chr5:43197045 1.80E-171 dispersed
Lac10g0606 Lac-Chr10:4651684 Lac3g2293 Lac-Chr3:31237655 5.00E-190 transposed
Lac2g3025 Lac-Chr2:47923657 Lac3g2293 Lac-Chr3:31237655 1.50E-153 transposed
Lac6g2719 Lac-Chr6:44960971 Lac3g2293 Lac-Chr3:31237655 6.60E-243 transposed
Lac7g0838 Lac-Chr7:6765851 Lac3g2293 Lac-Chr3:31237655 2.10E-233 transposed
Lac9g2934 Lac-Chr9:47124427 Lac3g2293 Lac-Chr3:31237655 5.30E-96 transposed
Lac3g2293 Lac-Chr3:31237655 Lac3g3049 Lac-Chr3:48780296 3.30E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86103 PF00069 Pkinase 1.20E-67 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2293 K08819 - csv:101215893 1107.43