Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g2313 | ATGACACCCATTTTGAGCTATGTTGTGTCCAAGTGGCAAGCGTTGTCCACTTCTGATCATGCCTCCGTGGTTTCCATTAACATATTTGTGGCTCTTCTCTGTGCTTGCATTGTGATCGGTCATCTTCTTGAGGAGACCCGGTGGATGAATGAGTCGATCACTGCCCTCTTCATTGGTCTGTTTAGCGGAGTCATCATTTTACTGGTCAGTGGAGGGAAAAGTTCACATCTATTGCTCTTTAGCGAAGACACATTCTTTATTTATCTTCTGCCACCTATTATATTCAATGCTGGGTTTCAGGTGAAAAAGAAACAGTTCTTCGTTAACTTTATGACAATTATGCTGTTTGGCGCAATTGGTACATTAATCTCTTGTTCAATCATCTCATTAGGTGCTTTTCAGTTCTTCAAGAAAATGGATGTTGGATCACTGGATATTGCTGATATTTTAGCAATTGGAGCTATATTTGCTGCAACAGATTCTGTATGCACATTGCAGATATTAAACCAGGATGAAACACCTCTACTTTACAGTCTAGTATTTGGCGAGGGTGTAGTGAATGATGCTACGTCTGTGGTGCTTTTCAATGCAATTCAGAGCTTAGACCTTACTAAAGTTGATGCAAGAGTTGCTTTACATTTTATTGGAAGCTTCTTTTATTTGTTTTCAACGAGCACTCTACTTGGAGTATTTGTTGGGCTGCTGAGTGCTTATACAATCAAAAAGTTATATTTTGGCAGGCACTCGACAGATCGTGAGGTTGCTCTAATGATGCTCATGGCATACCTTTCATATATGCTGGCTGAATTATTAGATTTGAGCGGCATTCTCACAGTGTTCTTTTGTGGAATTGTAATGTCACACTACACCTGGCATAATGTGACTGAGAGTTCAAGAGTTACCACTAAGCATGCTTTTGCTACCTTATCGTTCATTTCCGAGACATTTATCTTTGTTTATGTCGGCATGGATGCATTGGACATCGAGAAGTGGAGCTTTGTCAGTGATAGTCCGGGGACATCCGTTGCTGTGAGTGCAATATTACTAGGCCTGGTTATGGTTGGAAGAGCTGCTTTTGTTTTTCCATTATCATTTTTATCCAACTTAGCTAAAAAGTCAGGTTCTGAGAAAATTACCTTCAGGGAACAAGTTATAATTTGGTGGGCTGGTCTCATGAGAGGGGCTGTCTCTATTGCTTTAGCTTATCATCAGTTCACCAGAGCAGGGCACACTCAACTGCGAGGGAATGCAATGATGATCACTAGTACCATAAGTGTTGTCCTTTTCAGCACAATGGTGTTTGGGTTATTGACCAAACCTCTTATAAAATGTTTGATACCTCAACCAAAACAAACCACTAGCATGTTATCGGACCCGGCGACTCCAAAATCATTCTCGGTACCCCTACTTGGAAGTGCACAGGATTCGGAGCTGGATCTTGACGGTCCCCATGTTCCTCGTCCAAGCAGTATCCGCGCACTCCTTGCAACTCCTACTCACACTGTTCATCGCTACTGGCGAAAGTTCGATGATGCCTTCATGCGTCCAATGTTTGGGGGCCGGGGTTTTGTCCCCTTTGTTCCAGGATCCCCAACCGAAAGGGGTGGGCACTGA | 1614 | 42.75 | MTPILSYVVSKWQALSTSDHASVVSINIFVALLCACIVIGHLLEETRWMNESITALFIGLFSGVIILLVSGGKSSHLLLFSEDTFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLISCSIISLGAFQFFKKMDVGSLDIADILAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLTKVDARVALHFIGSFFYLFSTSTLLGVFVGLLSAYTIKKLYFGRHSTDREVALMMLMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISETFIFVYVGMDALDIEKWSFVSDSPGTSVAVSAILLGLVMVGRAAFVFPLSFLSNLAKKSGSEKITFREQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAMMITSTISVVLFSTMVFGLLTKPLIKCLIPQPKQTTSMLSDPATPKSFSVPLLGSAQDSELDLDGPHVPRPSSIRALLATPTHTVHRYWRKFDDAFMRPMFGGRGFVPFVPGSPTERGGH | 537 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 32055108 | 32059837 | + | Lag0035841.1 | Lac3g2313 | 602735 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g2313 | 537 | Gene3D | - | 145 | 197 | - | - | |
| Lac3g2313 | 537 | Pfam | Sodium/hydrogen exchanger family | 31 | 443 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Lac3g2313 | 537 | NCBIfam | sodium/hydrogen exchanger 3 | 25 | 459 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac3g2313 | 537 | PRINTS | Na+/H+ exchanger signature | 84 | 95 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac3g2313 | 537 | PRINTS | Na+/H+ exchanger signature | 98 | 112 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac3g2313 | 537 | PRINTS | Na+/H+ exchanger signature | 113 | 121 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac3g2313 | 537 | PRINTS | Na+/H+ exchanger signature | 153 | 163 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac3g2313 | 537 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 17 | 527 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0090333(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g1459 | Lac-Chr2:12531968 | Lac3g2313 | Lac-Chr3:32055108 | 7.50E-32 | dispersed | |
| Lac2g1460 | Lac-Chr2:12537854 | Lac3g2313 | Lac-Chr3:32055108 | 3.20E-76 | dispersed | |
| Lac3g2313 | Lac-Chr3:32055108 | Lac4g2363 | Lac-Chr4:43253525 | 7.00E-202 | dispersed | |
| Lac3g2313 | Lac-Chr3:32055108 | Lac12g2377 | Lac-Chr12:40873218 | 7.00E-194 | transposed |
Pathway information