Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2590 ATGGCTCTTGAGGCTGTGGTTTTCCCTCAAGACCCATTTGGCTACACCTCCACCAACAAAGATTTGTTCAATTTTGTGAGTTCTTCAGCAGCCTTCTGCTTTACCCATCATGAAGATGAAGATTTCTACTTTCTCCCCAACCAATCACAAAATTATTCTCCAATGTTGGATCATCATCATCATCATGATCATTATTGGAATAATTCTTCTCCAATATCAGATCCCAATTTTAACGAATTACGACCGCCGCCACCGACCGAGGCAGCGCCCGAGATCCACGGTGGTGGCGGTGGCGGAGGAGGAGGAGGGATCGGGCGGCCGGCGAGGCGGCGGAGGGTGAAGAGCCAAAAGAATAAAGAGGAAATAGAGAACCAAAGAATGACACACATTACTGTGGAGAGGAACCGAAGAAAGCAAATGAATGAGTATCTCTCTGTTCTTCGATCATTAATGCCTGACTCCTACGTCCAAAGGGGCGACCAAGCCTCAATCATAGGCGGTGCCATCAACTTTGTTAAGGAGCTTGAGCAGCAAGTACATTTGCTTAGTGCTCAAACAGATGTAAAGCCCTTTCCTCATGTTGGACCAAATAATAATAATAATCATCATCATCATAATATTTCTTCTCCTTTCTCTCATTTCTTTACCTTCCCTCAGTTTTCTTCTACTCCTTCTCCGTCCCCGTCCCCGTCCTCGTCCTCGTCCTCTCCCGACTCTGCCGCTGCCATGGCGTCCAACGATCGCAACAACCCGACCAACCAGATTCAGTCCTCCATTGCTGACATTGAAGTCTCCATGGCTGACTCCCATGCAAACCTCAAGATAAGGTGTAAAAAGCTCCCTAAACAGCTTCTTAAGATTGTCTCTGGCTTGCATACCTTGCGCCTCTCTGTTCTTCATCTCAATGTCTCCACTGCCCATCAGATTGTGCTCTATACTTTCAGTCTCAAGGTTGAGGAAGATTGTGGGCTTTCATCAGTGGATGAAATTGCAAGAGCTGTGTATCAGTTGATATGCAGAATTCAAGAAGAGGCATTCTCAATCTGA 1047 46.32 MALEAVVFPQDPFGYTSTNKDLFNFVSSSAAFCFTHHEDEDFYFLPNQSQNYSPMLDHHHHHDHYWNNSSPISDPNFNELRPPPPTEAAPEIHGGGGGGGGGGIGRPARRRRVKSQKNKEEIENQRMTHITVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQQVHLLSAQTDVKPFPHVGPNNNNNHHHHNISSPFSHFFTFPQFSSTPSPSPSPSSSSSSPDSAAAMASNDRNNPTNQIQSSIADIEVSMADSHANLKIRCKKLPKQLLKIVSGLHTLRLSVLHLNVSTAHQIVLYTFSLKVEEDCGLSSVDEIARAVYQLICRIQEEAFSI 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39328827 39331171 - Lag0036118.1 Lac3g2590 603012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2590 348 MobiDBLite consensus disorder prediction 222 253 - -
Lac3g2590 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 193 IPR036638 GO:0046983(InterPro)
Lac3g2590 348 Gene3D - 113 189 IPR036638 GO:0046983(InterPro)
Lac3g2590 348 Pfam Helix-loop-helix DNA-binding domain 125 176 IPR011598 GO:0046983(InterPro)
Lac3g2590 348 PANTHER MAX DIMERIZATION, MAD 1 342 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac3g2590 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 175 IPR011598 GO:0046983(InterPro)
Lac3g2590 348 MobiDBLite consensus disorder prediction 70 123 - -
Lac3g2590 348 SMART finulus 130 181 IPR011598 GO:0046983(InterPro)
Lac3g2590 348 Pfam Plant bHLH transcription factor, ACT-like domain 262 333 IPR054502 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g2590 Lac-Chr3:39328827 Lac6g2660 Lac-Chr6:44317132 3.40E-64 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23659 PF00010 HLH 1.40E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2590 - - - 0.0