Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2607 ATGGAAGTTACCAATTCAACAGCACCACCACCAAGAAACCACTTCCATAACCATAACCATAACCACACCAACCACAACCACCAACACCACACCCACAATGCCATTCTCAGCTCCAATTCCTTCCTCATCATCATAGCCTCCATAATCTCCATCACCATTTTCCTCGCCATCCTCCTCCTAATCTTCATGCTCCACCGCCTCAAATCCGCCCGAAACGCCGCCGCCGCCTCCGCCGCACAATCCACCACATTCGTCCCCCACACCGCCATCCATTTCGACTCAAGCCCAGAAGTGAAAGGGGGCGGTTGCTTGTACGGAGGCAATTCAGGGAGGATTCCTCAGTACAGAATCAGGGGAGTTCAAGTCTTCACTTACAAGGAGCTGGAATTGGCCACTGACTGTTTCAGTGAAGCCAATGTCATTGGAAATGGAAGATTTGGGATTGTGTACAGAGGGGTTCTTGGAGATGGAGCTCTCGTTGCTGTTAAAATGCTCCACAGAGAAGGCAAGCAGAGGGAACGTGCTTTCAGAATGGAGGTGGATCTCCTAAGCCGTTTGCACTCGCCCTGTTTGGTGGAGTTGCTTGGCTACTGTGCTGACCAACACCACAGGCTTCTGATATTTGAATTTATGCACAATGGCACTCTCCATCATCATCTGCATAATCCCAACAGTGAATCTCGGCCATTGGATTGGAATACTCGACTAAGGATAGCCCTTGACTGTGCCAAGGCACTTGAGTTCCTCCATGAACATGCAGTTCCATCTGTTATCCATAGAAACTTCAAGTGCACCAATGTCCTACTTGATCAGGATTTCCGAGCCAAGGTGTCGGATTTCGGCTCGGCCAAGATGGGGTCCGATAAGATCAATGGTCAGATATCTACACAAGTACTTGGAACAACGGGATATCTAGCACCAGAGTATGCTTCTACAGGTAAACTTACAACAAAGTCAGATGTATACAGCTACGGTGTTGTGCTGCTAGAGTTATTGACAGGTCGAGTGCCGGTCGATATCAAGCGGCCACAGGGCGAGCATGTTCTTGTCTCATGGGCTCTCCCAAGGCTAACTAATAGAGAAAAAGTAGAGAAAATGATTGACCCAGCTATTCAAGGAAAATACTCCAAGAAGGATCTAATTCAGGTAGCAGCCATTGCTGCGATGTGCGTGCAGCCCGAAGCTGACTACCGGCCTCTGATGACCGATGTCGTGCAGTCACTGGTTCCTCTAGTTAAGAACCCATCGTCGTCGTCTAGATTCTTCAATTGA 1272 48.82 MEVTNSTAPPPRNHFHNHNHNHTNHNHQHHTHNAILSSNSFLIIIASIISITIFLAILLLIFMLHRLKSARNAAAASAAQSTTFVPHTAIHFDSSPEVKGGGCLYGGNSGRIPQYRIRGVQVFTYKELELATDCFSEANVIGNGRFGIVYRGVLGDGALVAVKMLHREGKQRERAFRMEVDLLSRLHSPCLVELLGYCADQHHRLLIFEFMHNGTLHHHLHNPNSESRPLDWNTRLRIALDCAKALEFLHEHAVPSVIHRNFKCTNVLLDQDFRAKVSDFGSAKMGSDKINGQISTQVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPQGEHVLVSWALPRLTNREKVEKMIDPAIQGKYSKKDLIQVAAIAAMCVQPEADYRPLMTDVVQSLVPLVKNPSSSSRFFN 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39996838 39999335 - Lag0036135.1 Lac3g2607 603029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2607 423 PANTHER OS01G0750732 PROTEIN 19 413 IPR050885 -
Lac3g2607 423 SUPERFAMILY Protein kinase-like (PK-like) 113 408 IPR011009 -
Lac3g2607 423 CDD STKc_IRAK 141 411 - -
Lac3g2607 423 Gene3D Phosphorylase Kinase; domain 1 108 210 - -
Lac3g2607 423 FunFam Receptor-like serine/threonine-protein kinase ALE2 211 422 - -
Lac3g2607 423 Pfam Protein tyrosine and serine/threonine kinase 139 408 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g2607 423 MobiDBLite consensus disorder prediction 1 30 - -
Lac3g2607 423 ProSiteProfiles Protein kinase domain profile. 135 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g2607 423 MobiDBLite consensus disorder prediction 15 29 - -
Lac3g2607 423 FunFam Somatic embryogenesis receptor kinase 1 108 210 - -
Lac3g2607 423 Gene3D Transferase(Phosphotransferase) domain 1 211 420 - -
Lac3g2607 423 ProSitePatterns Protein kinases ATP-binding region signature. 141 163 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0765 Lac-Chr12:8015924 Lac3g2607 Lac-Chr3:39996838 4.10E-114 dispersed
Lac3g2607 Lac-Chr3:39996838 Lac4g2984 Lac-Chr4:48097144 1.50E-82 dispersed
Lac9g2371 Lac-Chr9:42902721 Lac3g2607 Lac-Chr3:39996838 9.40E-37 dispersed
Lac12g1721 Lac-Chr12:33040793 Lac3g2607 Lac-Chr3:39996838 2.10E-27 wgd
Lac2g2138 Lac-Chr2:26456278 Lac3g2607 Lac-Chr3:39996838 6.00E-79 wgd
Lac3g1859 Lac-Chr3:20715495 Lac3g2607 Lac-Chr3:39996838 1.80E-67 wgd
Lac3g1792 Lac-Chr3:18775165 Lac3g2607 Lac-Chr3:39996838 3.70E-53 wgd
Lac3g2607 Lac-Chr3:39996838 Lac5g1402 Lac-Chr5:28145867 1.60E-79 wgd
Lac3g2607 Lac-Chr3:39996838 Lac7g2600 Lac-Chr7:44399152 1.40E-72 wgd
Lac3g2607 Lac-Chr3:39996838 Lac7g1204 Lac-Chr7:11150898 4.90E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86105 PF07714 PK_Tyr_Ser-Thr 2.20E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2607 - - - 0.0