Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2643 ATGGCACTCTCTCTCTCATTCCTCAAATCTTCCTCTCTCTCTTTCTCCATTCTCTCTGTTTTCGTCTTCTTCATCCTCTTCACTCCCAATCGCTCGCCGGCATCCGCTTCCAGAAGGTCCCTCATCGCCGCCGGCGACTCCATTTCCAGTGCCTCGCCGATCCCATCTTGTTCCTCTGTTAAATCTCACTCCGATGGCCTCATTAACTACTTGTATTTCCATTTATGCTTCTTCAATCAAAACCCATCTCTCTCTGTCCCTTTTCTCACTCTCCTTCTTCTCCTCCACTTCTACATCCTCATCAAAACCGCTCAGGATCACTTCTCCATTGTCACTTCCAAGCTCGCCTTTCACCTCAACTTGTCCCCGAGTATGGCTGCCGTGACGCTCTTGGCATTGGGTAATGGGGCTCCCGATGTGTTCGCGTCTGTTGCGGCGGTTCGTGGTGGGCAGTATCGAACTGGGTTCGGTGCAATTCTCTCTGCAGGGACGTTTGTTTCTGCTTTTGTGGTTGGATTCGTGGCCATTTATGCTGCTCCGTTTTCGGTGAATCCGGCTCAGTTTGTGAGGGATGTGCTGTTTTATTTGACTGCAGCATTGTTCTTGTTCTATGTGTATCTTAGTGCAGAAATTTTCCTCTGGCAAGCTATTGGGTTTGTTGGATTTTATCTGTTCTTTGTTGGGCTTGTGTTTTGGATGGATTTGGGAATGGGGAGTGGAAAAGCTAAGAGTGGGGCTGATATGGGAGTGGCCAGAGAAGCTGAAGTTTACCATGGTGAGGTGCCTCAAGACTGTGAGATTGGAGAAGGCTACAAAAATGTGGATGAAGGGAAAACCAATTTTGGCTTTTGGGAAGCTCTTGGAATGTTCATTCATAGAACTGGTTGCATAGTCAATCTGTTTAAAGATTTTGATGGATCAAGGGATGAGGTTCAGGATGATCTGGTTATTATAACACCTTTGTTTAAGCTTATAATAGAAATGGTTTCACAGCCAATTTGTTTACAGTTCCCTGATTGGTCGAGCCTTGTTTTATTTTTGGCTAAATTGCAGAAACCACCCTTAAACTATGAGATCACAAAAGCGTGGGAGACTCCTGTCTCGTTTCTTTTGAAGCTCACCATTCCCCAGCCTGCACCTTCCGAATGGAGCAGATTCTTTACATCGGCGAATATTTCTCTGTGTCCTGTTGCCCTTCTATATGCCTGCAACTCATTCATGCCTTTTAACCATCCCATTGCTTTCCTCTTACCCCATACACATTTACCTCTTTGGTTAGTAGTTCTCTTAGCAAGCTCCTCTCTCGCAATTGTTCACTTTGTCATGGAAACTGAGCCCCCCAAAACCGAGCAAGTCCCCGTGGTGCTTGCAGCATTTGTCATGAGTGTATTTTGGATTTCGACCACTGCTGGGGAACTGCTGAACTGTCTTGCAGCTCTTGGGGTGCTTCTGAAACTCCCTCCAGCCCTACTTGGGCTCACTGTGCTTGCCTGGGGAAATTCAGTTGGGGATCTTGTGGCTGATGTTGCTCTTGCAAAAGCAGGCCAGCCCTTGCTGGCTATGGCTGGATGCTTTGCAGGGCCAATGTTTAATATGCTTGTTGGGCTCGGAACCGCGTTGGTTATACAAACAGCTAACAATTATCCAGAGGCCTATCAGCTTCAATTTCATATTGGAATCGTGATTGCATTCGTGTTCCTACTTTTCAGCCTGATGGGTTCCCTACTTGTAATTATTTGGTGCAGATTTCGGGTGCCTCGGTTTTGGGGATTCTGCCTTGTTGTGCTATATATTGTTTTCATGGCTACCAGCTTAGTGATGGCCAAGTTTTCTCCATGA 1839 46.49 MALSLSFLKSSSLSFSILSVFVFFILFTPNRSPASASRRSLIAAGDSISSASPIPSCSSVKSHSDGLINYLYFHLCFFNQNPSLSVPFLTLLLLLHFYILIKTAQDHFSIVTSKLAFHLNLSPSMAAVTLLALGNGAPDVFASVAAVRGGQYRTGFGAILSAGTFVSAFVVGFVAIYAAPFSVNPAQFVRDVLFYLTAALFLFYVYLSAEIFLWQAIGFVGFYLFFVGLVFWMDLGMGSGKAKSGADMGVAREAEVYHGEVPQDCEIGEGYKNVDEGKTNFGFWEALGMFIHRTGCIVNLFKDFDGSRDEVQDDLVIITPLFKLIIEMVSQPICLQFPDWSSLVLFLAKLQKPPLNYEITKAWETPVSFLLKLTIPQPAPSEWSRFFTSANISLCPVALLYACNSFMPFNHPIAFLLPHTHLPLWLVVLLASSSLAIVHFVMETEPPKTEQVPVVLAAFVMSVFWISTTAGELLNCLAALGVLLKLPPALLGLTVLAWGNSVGDLVADVALAKAGQPLLAMAGCFAGPMFNMLVGLGTALVIQTANNYPEAYQLQFHIGIVIAFVFLLFSLMGSLLVIIWCRFRVPRFWGFCLVVLYIVFMATSLVMAKFSP 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40982215 40986832 + Lag0036171.1 Lac3g2643 603065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2643 612 Gene3D - 388 606 IPR044880 -
Lac3g2643 612 Gene3D - 121 248 IPR044880 -
Lac3g2643 612 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 56 609 IPR051359 GO:0006812(PANTHER)|GO:0008324(PANTHER)|GO:0016020(PANTHER)
Lac3g2643 612 Pfam Sodium/calcium exchanger protein 456 605 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac3g2643 612 Pfam Sodium/calcium exchanger protein 91 232 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1094 Lac-Chr3:9009710 Lac3g2643 Lac-Chr3:40982215 3.60E-43 dispersed
Lac3g2643 Lac-Chr3:40982215 Lac7g2177 Lac-Chr7:35700419 6.60E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2643 K13754 - csv:101209909 788.104