Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2661 ATGGATCAGCAAGGGCATGGCCAGCCTTCGTCCATGGGAGCCGTTGGCAGTGGAGGTCAGATAGCATATGGTAGCAACCTGTACCATCCCAGCCAAATGACTGTAGGCCCAACTTCTGGATCTGTTGTTACATCAGTTGGAGGTATTCAGTCTACGAGTCAACCTGGTGGAGCTCAGCTTGCTCAACATCAACTTGCCTATCAGCATATCCACCAGCAGCAGCAACAGCAGCTTCAACAACAGCTCCAGACTTTTTGGGCGAATCAGTACCAAGAGATTGAGAAGGTAACTGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCAGCTGAGGCACCAGTTTTATTCGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACCGAAGAGAACAAGCGAAGGACACTTCAAAAGAATGACATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATTGTGCCGAGGGAGGATCTGAAAGACGAAGTACTCACATCGATTCCAAGAGGATCAATAACAGTTGGGGGGCCTGGAGATGCACTTCCGTACTGCTATATGCCATCTCAGCATGCACCTCAGGTTGGGGCGCCTGGAATGATTATGGGTAAGCCTGTGATGGACCCGACTATGTATGCTCAACAGTCGCACCCTTACATGCCTCCACAAATGTGGCAGCACGCACAAGATCAAGCCCCTCCTGATCAATAA 783 48.28 MDQQGHGQPSSMGAVGSGGQIAYGSNLYHPSQMTVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPTMYAQQSHPYMPPQMWQHAQDQAPPDQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41119549 41120331 + Lag0036189.1 Lac3g2661 603083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2661 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 76 190 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lac3g2661 260 Pfam Core histone H2A/H2B/H3/H4 64 166 IPR007125 GO:0003677(InterPro)
Lac3g2661 260 SUPERFAMILY Histone-fold 71 175 IPR009072 GO:0046982(InterPro)
Lac3g2661 260 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982(InterPro)
Lac3g2661 260 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0292 Lac-Chr12:3250347 Lac3g2661 Lac-Chr3:41119549 1.80E-65 dispersed
Lac3g0076 Lac-Chr3:506713 Lac3g2661 Lac-Chr3:41119549 1.00E-53 dispersed
Lac3g2661 Lac-Chr3:41119549 Lac5g2166 Lac-Chr5:40217466 1.60E-21 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23660 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2661 K08066 - csv:101209664 442.965