Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2767 ATGTCCAAAATCTCAGGGTGTTCTGATGATGGTGGAAGCTTGGTGTCTGAAGGTGAGAAATTAGGGAATCAGTTCAGCCATGGAAGCTCTCAATCCCATCAGCAGCCTCAGCTTGCAGCTCCCAAGAAGAAAAGAAACTTACCAGGAACACCAGACCCGGATGCAGAAGTGGTCGCGCTATCTCCTAAAACCCTAATGGCGACGAATAGGTTTGTGTGTGAAATATGCAATAAGGGATTTCAAAGAGACCAGAACTTGCAGCTGCACAGGCGAGGGCACAACCTGCCATGGAAGCTGAAGCAGCGGACGAGCGGGAGCGAGACAAGAAGGAAGGTGTACATTTGCCCGGAAACGTCGTGTGTGCACCACAATCCGGTGAGGGCGCTCGGAGACCTCACCGGAATCAAGAAGCATTTCAGCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGAGAAATGCTCCAAAAAATATGCTGTTCAATCCGACTTGAAAGCTCATTCCAAAACCTGTGGCTCCAAGGAATACAAATGTGACTGTGGCACAATCTTTTCCAGGAGAGACAGCTTCATCACCCACAGAGCATTTTGCGATGCCTTAACAGAAGAAAACAACAAGCTAGCTCGTCAAGGAGCAACAATGGCTTCCACCGCCATTAATGCACCTCCCTTTCAACCTCAACAGCTTCCTCACCTTCTCTCTCAACCTTCCCTCCCCTCGCCGCCATTAACACTGCCCCACGACCTCATGCCTATCCCTCCAAAACCCTTGAACCTATCTGCCGGATCCATGTTTTCATCCTCCATTTCCAACAACTCCGCCACCTCCGATCAAAACGACCACCAGTTTCCCTCCTCCTCCGCCCTCATGTCCGCCACTGCACTGCTGCAGAAGGCGGCACAGATGGGAGCTGTCGTGAGCGGGGGCGGAAACCACCCGGCCACTTGTTTGAGCTCCCCCATTATCCAACAGAAGAAGGGCTACTTTACAACAATGGCTCCTTCTTCCTTGGGCGGGCTGCTGTCCACCTCCTATTTGCAGAAATGCCCACAAGGAAATATATCGTCGTCTCAGCTGCCTTCTAATGGCGGAGCTATGGACATGGAGATGATCGGCGACATTCCGATGCTGAACGGAGTGCTGGATCAGCCGCTCGTGGAGGCGGCGAGGAAGACGATGACACTGGATTTGTTGGGGGCTGAGGGAGGGAATGGGAGGAACTTTCAGGCGCCAGAAAGTGTGGGATTTGGAGGGCTTATGGATAATATGAGTTACTTTCGACACCAAGGGACCATGGGAAGGCAGACATGGGAGATTTGA 1317 51.78 MSKISGCSDDGGSLVSEGEKLGNQFSHGSSQSHQQPQLAAPKKKRNLPGTPDPDAEVVALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSETRRKVYICPETSCVHHNPVRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHSKTCGSKEYKCDCGTIFSRRDSFITHRAFCDALTEENNKLARQGATMASTAINAPPFQPQQLPHLLSQPSLPSPPLTLPHDLMPIPPKPLNLSAGSMFSSSISNNSATSDQNDHQFPSSSALMSATALLQKAAQMGAVVSGGGNHPATCLSSPIIQQKKGYFTTMAPSSLGGLLSTSYLQKCPQGNISSSQLPSNGGAMDMEMIGDIPMLNGVLDQPLVEAARKTMTLDLLGAEGGNGRNFQAPESVGFGGLMDNMSYFRHQGTMGRQTWEI 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43584579 43590805 + Lag0036295.1 Lac3g2767 603189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2767 438 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lac3g2767 438 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 174 211 - -
Lac3g2767 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 401 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac3g2767 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Lac3g2767 438 FunFam protein indeterminate-domain 12-like 50 119 - -
Lac3g2767 438 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Lac3g2767 438 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 147 171 - -
Lac3g2767 438 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 109 143 - -
Lac3g2767 438 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
Lac3g2767 438 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
Lac3g2767 438 Gene3D Classic Zinc Finger 49 120 - -
Lac3g2767 438 Gene3D Classic Zinc Finger 127 206 - -
Lac3g2767 438 MobiDBLite consensus disorder prediction 1 54 - -
Lac3g2767 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 176 IPR013087 -
Lac3g2767 438 SMART c2h2final6 71 93 IPR013087 -
Lac3g2767 438 SMART c2h2final6 148 168 IPR013087 -
Lac3g2767 438 SMART c2h2final6 113 143 IPR013087 -
Lac3g2767 438 MobiDBLite consensus disorder prediction 19 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g2767 Lac-Chr3:43584579 Lac9g2004 Lac-Chr9:39675566 1.20E-82 dispersed
Lac4g2400 Lac-Chr4:43540927 Lac3g2767 Lac-Chr3:43584579 1.70E-08 transposed
Lac13g1911 Lac-Chr13:24627739 Lac3g2767 Lac-Chr3:43584579 6.90E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23662 PF00096 zf-C2H2 0.0043 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2767 - - - 0.0