Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2866 ATGAGTTATAAGGATGATGATGCTCAGAACAAGAAAAGATACGCCATCATCGGCGTGTCGTCGATGTTACTCGTGGCGATGGTGGTAGCGGTGACGGTCGGCGTTAACCTAAACCAGGACGAAACGGCCGATCCGGCGACCGGAAACAAGTCCCATGAAATATCTTCTTCTGTGAAACTGATCAAAGACATTTGCCGACCTACTGATTACAAACAAGAATGTGTTGAAAGCCTCAAGTCTGCTGACACTTCGGATCCCAAGGAATTGGTTCAAGCTGGCTTCAAGGCTGCCGTGAAATTGATCCAAACCGCTGCTAATAAATCTCTGACCTTGAAAGAGATTGAGAAAGACCCTAGAGCCTCCCAAGCCCTCGCTGGTTGCAAGGAGCTCATGGATTTCGCCATCGAGGAGCTTAAATGGTCGATCAAGAGACTCGGCGAGTTTGATATTACCAAACTCGACGAGACTTTGATTGACATTAAGATCTGGCTCAGCGCCACCATTACCTATCAGGAAACTTGCTTGGATGGGTTCGAGAACACGACGGGGAATGCGGCGGAGAAGATGAAGAAGGCATTGAAGACGTCGATGAGAGTGAGCAGCAATGGGTTAGCGATGGTGACGGAAATCTCGTCGATGTTGACGGATTTGCAAATTCCGGGGATCAACCGACGGAGACTTTTGGATATTCCAGTTCTTGGGCATGACGATTACCCCGACTGGGCGAACCCCGGGATGAGGCGACTCCTTGCGGCGAAGGGGAAGGGGAAGCCCAACATCGTGGTGGCCAAGGATGGAAGTGGGCAGTACAAGACCATTCAAGAGGCTCTGGACAGAGTCCCAAGGAGGAAGAACAACCAAACATTTGTGATTCACATCAAGCAAGGAGTGTACAAGGAATATCTGACCATCAACAAAACCCTGACCCATTTGATGCTGATTGGCGATGGCCCCAAAAAGACCATCATCTCTGGAAACAAGAACTTCATTGATGGCACACCCACCTTCAAAACTGCAACAGTTGCTGTGACAGCAGAGCACTTCATGGCGAGAGACATCGGGTTCGAGAACACAGCAGGCCCAGAGAAGCACCAAGCAGTGGCATTGCGAGTCCAAGCCGACAAAGCCGTATTCTACAACTGCGAGATGCATGGGTTCCAAGACACTCTGTACGTCCACACCATGCGCCAATTCTACCGCGACTGCGTGGTCTCCGGCACCATCGACTTCGTGTTCGGCGACGCGGCCGTGGTCTTCCAAGGCTGCACCTTCCTTATCCGCAAGCCCCTTTCAAACCAACAATGCATCGTCACAGCCCACGGGCGCAAGGAGAAGCGCCAGCCCTCCGCCCTCATCATCCAGAATTCCTCGTTCAAGCCGGACACCGACCTGGCTCCGGTGAAGAAGCAGTTCCGATCGTACCTGGGACGACCCTGGAAGGAGTACTCAAGAACCATCATAATGGAATCATTCATCGACGACTTGATCCAGCCAGAAGGGTGGCTCCCATGGGATAGGGAGTGGGGGTTGAAGACTTGCTTCTACACAGAGTTCAACTGTTATGGCCCAGGCTCCGACAAGTCCAAGAGGGTCAAGTGGAGGGGGATCAAGACCATCACGCCAAAGCATGCACTCGATTTCACTGTAGGCAGGTTCATTTTGGGGGATAGGTGGATTAAGCCTACCGGAGTTCCATTTGTCTCCGGCATGACCAAAGCCGGCGGCGCAGCTGCTCATTGA 1740 52.07 MSYKDDDAQNKKRYAIIGVSSMLLVAMVVAVTVGVNLNQDETADPATGNKSHEISSSVKLIKDICRPTDYKQECVESLKSADTSDPKELVQAGFKAAVKLIQTAANKSLTLKEIEKDPRASQALAGCKELMDFAIEELKWSIKRLGEFDITKLDETLIDIKIWLSATITYQETCLDGFENTTGNAAEKMKKALKTSMRVSSNGLAMVTEISSMLTDLQIPGINRRRLLDIPVLGHDDYPDWANPGMRRLLAAKGKGKPNIVVAKDGSGQYKTIQEALDRVPRRKNNQTFVIHIKQGVYKEYLTINKTLTHLMLIGDGPKKTIISGNKNFIDGTPTFKTATVAVTAEHFMARDIGFENTAGPEKHQAVALRVQADKAVFYNCEMHGFQDTLYVHTMRQFYRDCVVSGTIDFVFGDAAVVFQGCTFLIRKPLSNQQCIVTAHGRKEKRQPSALIIQNSSFKPDTDLAPVKKQFRSYLGRPWKEYSRTIIMESFIDDLIQPEGWLPWDREWGLKTCFYTEFNCYGPGSDKSKRVKWRGIKTITPKHALDFTVGRFILGDRWIKPTGVPFVSGMTKAGGAAAH 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45706899 45708718 - Lag0036394.1 Lac3g2866 603288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2866 579 Pfam Plant invertase/pectin methylesterase inhibitor 59 206 IPR006501 GO:0004857(InterPro)
Lac3g2866 579 Gene3D - 254 570 IPR012334 -
Lac3g2866 579 Pfam Pectinesterase 259 556 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac3g2866 579 CDD PMEI-like_3 64 212 - -
Lac3g2866 579 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Lac3g2866 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 211 IPR035513 -
Lac3g2866 579 PANTHER PECTINESTERASE 13 561 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac3g2866 579 NCBIfam pectinesterase inhibitor domain 56 209 IPR006501 GO:0004857(InterPro)
Lac3g2866 579 SMART PMEI_2 56 206 IPR006501 GO:0004857(InterPro)
Lac3g2866 579 SUPERFAMILY Pectin lyase-like 258 569 IPR011050 -
Lac3g2866 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 211 IPR035513 -
Lac3g2866 579 FunFam Pectinesterase 253 570 - -
Lac3g2866 579 FunFam Pectinesterase 57 211 - -
Lac3g2866 579 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g2866 Lac-Chr3:45706899 Lac7g0905 Lac-Chr7:7568420 5.40E-176 dispersed
Lac3g2866 Lac-Chr3:45706899 Lac3g2867 Lac-Chr3:45713742 1.00E-97 tandem
Lac13g2394 Lac-Chr13:38338339 Lac3g2866 Lac-Chr3:45706899 1.80E-129 transposed
Lac4g2556 Lac-Chr4:44735763 Lac3g2866 Lac-Chr3:45706899 3.60E-46 transposed
Lac8g2163 Lac-Chr8:39965811 Lac3g2866 Lac-Chr3:45706899 9.00E-123 transposed
Lac3g2866 Lac-Chr3:45706899 Lac9g0227 Lac-Chr9:3569689 2.80E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2866 K01051 - csv:101207393 998.038