Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2867 ATGTCTAGAGTTTCTCTAGCCATTCATATTTTTATGTTCATCCTCATTCCTATATTACAAGTTTCTTCTATGGATGTTATCTACCCGAACGAGCAAAATAATGCTATACAATCTATGATTTCCCAGATTTGTGCAGATATTGAAGATCGAAATTCCTGCATTTCAAACATACAACTTGAGTTGGGAAGAAGTGGGAACTCACATCCAAGTTCTGTCTTGAGTGCTGCAATCAGAGCAACTCTTAATGAAGCAAGACGAGCCATAGAGTCTATAACGAAGTTCAGCACATTCTCGTTTAGCTATCGTGAAGAAATGGCAATCGAGGACTGCAAGGAGCTTCTTGATTTTTCTGTCTCAGAGCTTGCCTGGTCGTTAGCTGAGATGAAAAGGATTCGTGCAGGCGAAAATGAAGCTCCGTATGAAGGGAACCTAAAAGCATGGCTGAGCGCTGCTCTAAGCAACCAAGACACATGCCTTGAAGGCTTTGAGGGCACAGACAGGCACATTGTAAGTTTCATTAGGGGGAGTTTGAAGCAAGTTACACTGCTCATTAGCAATGTCTTGGCATTGTACACTCAATTACACAGCTCACCATTTCAACCTCCACGGAATGAAACAATAGAGAAAACTAGAAGTACAGAGTTTCCAGATTGGATGACGGATAGCGAGCACGAGCTTGTGAAATCTCATCCACGTAGTGTCCATGTTGATGCAGTTGTGGCTTTGGATGGAAGCGGAGATTTCCGTTCGATCACAGAAGCCGTAAATGAAGCTCCAAATTATAGTAACAGAAGGTACATCATATATGTGAAGAAGGGAGTCTACAAAGAAAATATCGATATGAAGCGAAAGAAAACCAACATAATGTTTATTGGAGACGGTATCGGAAAAACAGTGGTGACAGGAAGTCGCAATTTTCTGCAGGGATGGACTACTTTCAGAACTGCAACTGTTGCTGTTTCTGGGAAGGGATTCATAGCAAGAGACATGACATTTCGCAACACGGCTGGACCACAAAACCATCAGGCAGTGGCACTCCGAGTCGACTCCGATCAATCAGCCTTCTTCCGGTGCAGCTTCGAGGGCTATCAAGACACACTTTACGTCCACTCTCTACGACAGTTTTACAGGGAATGCAACATATATGGCACCATAGATTACATCTTCGGCAACGGGGCAGCAGTGTTCCAAAAATGCAACATCTACACCAGAGTTCCGCTCCCTCTCCAGAAGGTCACGATCACCGCACAAGGCCGAAAATCTCCGCATCAGAGCACCGGTTTTTCGATCCAAGACAGCTTTATTTATGCAACTCAGCCAACATATCTAGGAAGACCATGGAAGCTATTCTCAAGGACTGTCTTCTTGAACACTTACATGAGTGGTTTGGTGCAACCTAGAGGGTGGCTTGAGTGGTATGGCAATTTTGCTTTAGGCACATTATGGTATGGAGAGTATAAGAACTATGGACCTGGTGCATCCGTTTCGGGTCGGATCAAATGGCCCGGGTACCACATTATTCAAGACGCTGCTGTGGCTAAGTTCTTCACCTCCGAGCACTTCATCGACGGTCGATCATGGTTGCCGAGGACGGGTGTTAAGTTCTCACTTGGATTGAGTAATTAA 1626 44.53 MSRVSLAIHIFMFILIPILQVSSMDVIYPNEQNNAIQSMISQICADIEDRNSCISNIQLELGRSGNSHPSSVLSAAIRATLNEARRAIESITKFSTFSFSYREEMAIEDCKELLDFSVSELAWSLAEMKRIRAGENEAPYEGNLKAWLSAALSNQDTCLEGFEGTDRHIVSFIRGSLKQVTLLISNVLALYTQLHSSPFQPPRNETIEKTRSTEFPDWMTDSEHELVKSHPRSVHVDAVVALDGSGDFRSITEAVNEAPNYSNRRYIIYVKKGVYKENIDMKRKKTNIMFIGDGIGKTVVTGSRNFLQGWTTFRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSFEGYQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFIYATQPTYLGRPWKLFSRTVFLNTYMSGLVQPRGWLEWYGNFALGTLWYGEYKNYGPGASVSGRIKWPGYHIIQDAAVAKFFTSEHFIDGRSWLPRTGVKFSLGLSN 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45713742 45715498 - Lag0036395.1 Lac3g2867 603289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2867 541 SMART PMEI_2 35 190 IPR006501 GO:0004857(InterPro)
Lac3g2867 541 Pfam Pectinesterase 237 524 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac3g2867 541 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 196 IPR035513 -
Lac3g2867 541 CDD PMEI-like_4 36 194 - -
Lac3g2867 541 ProSitePatterns Pectinesterase signature 2. 381 390 IPR033131 -
Lac3g2867 541 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 195 IPR035513 -
Lac3g2867 541 NCBIfam pectinesterase inhibitor domain 6 195 IPR006501 GO:0004857(InterPro)
Lac3g2867 541 Gene3D - 232 539 IPR012334 -
Lac3g2867 541 Pfam Plant invertase/pectin methylesterase inhibitor 39 190 IPR006501 GO:0004857(InterPro)
Lac3g2867 541 SUPERFAMILY Pectin lyase-like 236 538 IPR011050 -
Lac3g2867 541 FunFam Pectinesterase 231 539 - -
Lac3g2867 541 ProSitePatterns Pectinesterase signature 1. 262 281 IPR018040 -
Lac3g2867 541 PANTHER PECTINESTERASE 11 529 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g2867 Lac-Chr3:45713742 Lac5g0013 Lac-Chr5:155912 2.90E-131 dispersed
Lac8g1608 Lac-Chr8:33949093 Lac3g2867 Lac-Chr3:45713742 4.00E-07 dispersed
Lac3g2866 Lac-Chr3:45706899 Lac3g2867 Lac-Chr3:45713742 1.00E-97 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2867 K01051 - csv:101202977 1024.62