Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2933 ATGAGTCAGACAGAAGTATCAAGGATTAAACCCCCTCTCGTTCCGCTCGCTACTTTGATCGGTCGCGAGCTGAGGAACGAGAAGGTTGAGAAACCTTTTGTGAAGTATGGACAGGCTGCTTTGGCAAAGAAAGGAGAGGACTACTTTCTGATCAAGCCTGATTGCCAGCGTATTCCTGGAAACCCTTCAACTGCATTTTCTGTCTTTGCGATTTTCGATGGACATAATGGCATTTCAGCTGCTATCTTTGCGAAGGAGCATTTACTGGGTAATGTCCTAAGTGCAATTCCTCAAGGAGCCAGTCGAGAAAAATGGCTGCAAGCCCTTCCTCGGGCACTGGTTGCTGGTTTTGTCAAAACTGACATAGAGTTTCAGCAGAAAGGTGAAACTTCTGGGACTACTGTTACGTTTGTTGTGATTGATGGGTGGACTGTTACCGTTGCATCTGTGGGAGATTCACGGTGCATATTAGACACCCAAGGAGGTGTGGTTTCTCTATTGACGGTTGATCATAGGCTGGAGGAAAATGAGGAAGAGAGGGAACGTGTAACTGCAAGTGGTGGTGAGGTTGGGAGGCTCAATGTTTTTGGCGGCAATGAGGTTGGTCCTCTCCGCTGCTGGCCTGGTGGCTTATGTCTTTCTAGGTCCATTGGTGATACAGATGTAGGAGAATATATTGTCCCAATACCGCATGTTAAGCAAGTGAAGCTTTCTAGTGCTGGCGGAAGGCTAATAATTGCTTCTGATGGTATATGGGACGCTTTATCATCTGACATGGCTGCAAAGTCTTGTCGAGGTTTACCTGCAGAGCTTGCTGCTAAGCTAGTTGTGAAGGAGGCTTTGCGGTCAAGGGGGTTGAAGGATGATACAACTTGCTTAGTTGTTGATATTATACCATCCGAGCAACCTATATTATTACCACCAACTCCAAGGAAGAAGCAAAATGTGCTTACCTCACTCTTTGGGAAGAAATATCAGAACTCTTTGGGCAAATCTGCAAATAAACTTTCTGCTGTTGGAGTTGTGGAGGAATTGTTTGAAGAAGGTTCCGCTATGCTTGCTGAAAGGCTAGGCAAAGATTTTCCTTCTGATCCAAACTCAGGGATCTTCAAATGTGCAGTCTGTCAAGTGGATCAACCCCCAAACGAAAATTTGTCAATGAACTCGGGGCCTTTCTTCTCGCCATCGTCAAAGCCATGGGAAGGTCCATTCCTCTGTGCAAATTGTCGAAGAAAGAAAGACGCCATGGAAGGAAAAAGGCCACCAAAACCTACAATAACCGTTTAG 1287 45.77 MSQTEVSRIKPPLVPLATLIGRELRNEKVEKPFVKYGQAALAKKGEDYFLIKPDCQRIPGNPSTAFSVFAIFDGHNGISAAIFAKEHLLGNVLSAIPQGASREKWLQALPRALVAGFVKTDIEFQQKGETSGTTVTFVVIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENEEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSSAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSEQPILLPPTPRKKQNVLTSLFGKKYQNSLGKSANKLSAVGVVEELFEEGSAMLAERLGKDFPSDPNSGIFKCAVCQVDQPPNENLSMNSGPFFSPSSKPWEGPFLCANCRRKKDAMEGKRPPKPTITV 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46773876 46777113 + Lag0036461.1 Lac3g2933 603355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2933 428 Gene3D - 37 302 IPR036457 -
Lac3g2933 428 ProSiteProfiles PPM-type phosphatase domain profile. 32 297 IPR001932 -
Lac3g2933 428 PANTHER PROTEIN PHOSPHATASE 36 296 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac3g2933 428 SUPERFAMILY PP2C-like 43 297 IPR036457 -
Lac3g2933 428 SMART PP2C_SIG_2 51 297 IPR001932 -
Lac3g2933 428 SMART PP2C_4 23 295 IPR001932 -
Lac3g2933 428 CDD PP2Cc 43 297 IPR001932 -
Lac3g2933 428 FunFam probable protein phosphatase 2C 5 35 302 - -
Lac3g2933 428 Pfam Protein phosphatase 2C 61 280 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0521 Lac-Chr13:3824224 Lac3g2933 Lac-Chr3:46773876 4.80E-169 dispersed
Lac2g0303 Lac-Chr2:2263492 Lac3g2933 Lac-Chr3:46773876 1.70E-140 dispersed
Lac3g2933 Lac-Chr3:46773876 Lac7g0812 Lac-Chr7:6494413 1.10E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2933 - - - 0.0