Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2935 ATGACTTCTTTTGTCAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGTTGATAAATGTTGGCCAGAAGCAAGATGCCTTACAAGCTCTTCACGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAACCTCTTGAAAGGATTATGTTTAAGTATGTTGAGCTTTGTGTGGACATGAGGAAAGGGAGATTTGCGAAGGATGGTTTAATCCAATATCGTATTGTTTGTCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCTACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCATTGGAAGAAGCTCTGGATGTTGATGACTTAGAAGCTGATAAAAGGCCCGAAGATCTGATGCTTAGTTATGTCAGTGGGGAGAAGGGAAAAGATAGATCTGATCGTGAACTTGTTACCCCTTGGTTTAAATTTTTATGGGAGACATATCGAACAGTTCTTGAGATACTAAGGAATAACTCGAAGTTGGAGGCACTTTACGCGATGACCGCCCATCGTGCCTTCCAGTTCTGTAAGCTGTATAAAAGAACGACAGAATTTCGCAGATTATGTGAAATTATTAGAAATCATCTTGCTAACCTTAACAAGTATAGAGACCAAAGAGACCGACCTGACCTATCTGCACCAGAGAGTTTGCAGTTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAACTCTGGCAGGAAGCTTTTCGTTCTGTTGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACACCCAAACCATCGTTGATGGTGGTTTATTATGTCAAATTAACAGAGATCTTCTGGATATCCGATAGTAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCCTCCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAGGACTTACAGCTGATAGCATCATCAGTTGTTTTAGCAGCTCTTGCAGTGTCCCCCTATGACTCCAAGCATGGTGCTTCACATTTAGAACTTGAACATGAGAAAGAACGCAATTTGAGGATGGCTAATCTTATAGGGTTCAATTTAGACTCCAAACTTGAAAGTAGAGATGTGCTTTCGAGGGCAAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGTGCAACTCAGGAAATTAAAGATCTTTATCATCTTTTGGAGCATGAGTTCTTTCCTCTTGATCTTGCATTAAAATTGCAACCCTTATTGGCCAAAATATCAAAGCTTGGAGGTAAGCTTTCATCAGCCTCATCTGTCCCCGAAGTGCAATTGTCCCAGTACGTTCCAGCTCTTGAAAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCCAGGTGTACCAGACTATGAAAATTGAGAGTCTATCTCAGATGATACCATTTTTTGATTTTTCTGCTGTGGAGAAAATATCAGTTGATGCAGTTAAACGAAATTTCATTGCTATGAAAGTTGATCATTCAAGGAACATCGTGATATTTGGCAATTTGGGTATTGAATCAGATGGGCTTCGAGACCACCTGACTGTTCTTGCTGAATCCCTAAACAAAGTGAGAGCCATGATCTACCCTCCAGTAAGGAAAGCTTCAAAAACTGGTGAAATATTGCCTGATTTGGCAGATATTGTTGATAAAGAGCACAAGAGGCTTCTTGCTCGAAAATCAATAATCGAGAAGAGGAAGGAAGAGCAGGAACGGCAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGAAGGTTAAAGTTACTGAAGATAACTGAAGAGGCTGAACAGAAGCGGCTTGCGGCAGAATATGAACAAAGGAAAAGTCAACGGCTTCGTAGAGAAATGGAGGAGCGAGAACTTGAAGAAGCACAAGCTTTGCTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCAGTTCTTGATTCTGAAAAGTTGACGAAACAATCTTTAATGCAATTGGCACTTACTGAACAATTAAGGGAAAGACAGGAAATGGAGAAGAAATTACAAAAGCTAGCAAAAACCATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCAGCAACTTTAATTGAAGCTGCATTTCAGCAACGATTACTTGAAGAGAGAATGATTCATGAACGTGATCAGCAGCTTGAGGTTGAGTTGAGCAAGCAGCGCCATGAAGGTGATCTCAAGGAAAAGAATAGATTGGCTCGAATGTTGGAGAGTAAGAAAATTTTCCAAGAAAGAGTCATCAGTCTTCGCCAAGAGGAGTTCAACAAACGTAGAGCTGAGAGAGAAGAGCAGATAAGGCAAATAATTCAGGCTCGGAAAGTGGAAAGGGAGGCGAAGAGGAAGAAAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATCAGAATATTGCGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCTGAGAGGAGAAAAAGGGAGGAAGCTGAACGCAAGGCAAAATTGGATGAGATTGCTGAGAAGCAGAGGCAGAGGGAGCGAGAATTGGAAGAAAAAGAAAAACTGCGGAAAGAAATTCTCTTCGGTGGTGGCAGATCAGCCGATGCTCCAGCTAGACCTGATGTTTCTCCTGGTTCTCGGCCTCAGGAGTCTGGTACTGCTGCTCCAGCTGCTGCAGCTGCTGCGGCTGCTGGCTCGTCGCCAGGAAAATATGTGCCTAGGTTCCGACGGGAACGGACTGAAAGCTCCAGCCCTAATGCACCCCCACCTGAATCTGATCGATGGGGAAGCAGCAGGCCCGATAATCGAACATCGCAACCAGACAGCTGGCGCAATGAAGATCGTAGACCACCTTCGTTTGGAAGTTCGAGAACATCATGGTCCTCATCGCGAGTTCCTGCTCGTGGTTCAGAACGCTGA 2919 43.13 MTSFVKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKLYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVVLAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFNLDSKLESRDVLSRANLLSELVSKGVLSCATQEIKDLYHLLEHEFFPLDLALKLQPLLAKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSQVYQTMKIESLSQMIPFFDFSAVEKISVDAVKRNFIAMKVDHSRNIVIFGNLGIESDGLRDHLTVLAESLNKVRAMIYPPVRKASKTGEILPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKSQRLRREMEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQSLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERDQQLEVELSKQRHEGDLKEKNRLARMLESKKIFQERVISLRQEEFNKRRAEREEQIRQIIQARKVEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKREEAERKAKLDEIAEKQRQRERELEEKEKLRKEILFGGGRSADAPARPDVSPGSRPQESGTAAPAAAAAAAAGSSPGKYVPRFRRERTESSSPNAPPPESDRWGSSRPDNRTSQPDSWRNEDRRPPSFGSSRTSWSSSRVPARGSER 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46793462 46801406 - Lag0036463.1 Lac3g2935 603357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2935 972 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Lac3g2935 972 Coils Coil 93 120 - -
Lac3g2935 972 MobiDBLite consensus disorder prediction 815 861 - -
Lac3g2935 972 MobiDBLite consensus disorder prediction 815 972 - -
Lac3g2935 972 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 963 IPR027512 GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER)
Lac3g2935 972 Coils Coil 610 649 - -
Lac3g2935 972 Coils Coil 732 752 - -
Lac3g2935 972 Gene3D - 363 493 - -
Lac3g2935 972 Gene3D - 269 343 - -
Lac3g2935 972 Coils Coil 799 858 - -
Lac3g2935 972 MobiDBLite consensus disorder prediction 952 972 - -
Lac3g2935 972 Pfam eIF3a, PCI domain, TPR-like region 8 407 IPR054711 -
Lac3g2935 972 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Lac3g2935 972 Pfam PCI domain 438 509 IPR000717 -
Lac3g2935 972 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Lac3g2935 972 Coils Coil 561 600 - -
Lac3g2935 972 Coils Coil 669 699 - -
Lac3g2935 972 Gene3D UVR domain 217 268 - -
Lac3g2935 972 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 957 IPR027512 GO:0005852(InterPro)
Lac3g2935 972 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Lac3g2935 972 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2935 K03254 - csv:101209344 1526.53