Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g2944 ATGGAGCATTTGTTATTCAAGTTTAATGAACTAACAAAGTCACTTAGAGCTAAGAAATGGAGAAACTTTGAAAATGCTTCAGTTGTGAGTGGAAGGGAAGCTGCAGAAGCAATGGCTAAGTCTGCAAAGAAGAAGGATCTGATCATCCATGGTTGCGGGAGTGTAAATTTCGACGGTTCGAGCAACTTTGTCTCGAGTTTCTCGAAGAGGGGCGAGAAAGGAGTCAATCAGGACTGCTGCATTGTGTGGGAGGAATTTGGGTGTCAAAAGGATATGATATTTTGTGGGGTTTTTGATGGGCATGGACCATGGGGCCATTTTGTTGCAAAAAAGGTTAGAAAGTCAATGCCAACTGCTCTGCTTTGCAATTGGCAAGAAGCACTTGTTCAAACTGCTCTTCACCCACATTTGGAACTCAACTCAGGTAAAACACATCTACACTTCAATCTATGGGAGCATTCTTATATAGAAGCCTGTGCTACCGTCGATCAAGAACTCGAACGACACCGTAAAATCGACACGTTTCATAGTGGAACAACGGCCCTTTCCATCGTCCGACAAGGTGATGTAATTGTTATTGCAAACATCGGCGACTCCCGGGCCGTGCTGGCTACAACTCCTGATGATGGAAACTCGGTACCGTCACCAATTCAGCTCACTATCGATTTCAAGCCGAATCTACCTCAGGAGGCTGAGAGGATAGCACAATGCAATGGGAGAGTTTTCTGCTTGGAAGATGAACCGGGGACTCACCGTCTTTGGCTTCCGAACGGTGAAACGCCGGGGCTATCGATGTCGAGATCGTTCGGCGATTTTTGTGTTAAGTGTTTTGGACTCATTTCTCTGCCGGATGTAACACAAAGAACTGTAACCAACAAAGACTTATTTGTTGTTCTTGCAACTGATGGGATATGGGACGTCGTCTCGAATCAAGAAGCAGTGCAGATCGTACATTCGACCGTAGATAGAGCAAAATCAGCTCGGCGGTTGGTTGATTATGCAACACGTGCATGGAAGCGGAAGAGGCCGGGAATTGCAGTCGATGACATGTCGGTCATCGTCCTCTTCCTCCATTCTTCACCTTTGCATCAACAAGCTTTTGTTGTAGCTCCATTGTAG 1119 45.93 MEHLLFKFNELTKSLRAKKWRNFENASVVSGREAAEAMAKSAKKKDLIIHGCGSVNFDGSSNFVSSFSKRGEKGVNQDCCIVWEEFGCQKDMIFCGVFDGHGPWGHFVAKKVRKSMPTALLCNWQEALVQTALHPHLELNSGKTHLHFNLWEHSYIEACATVDQELERHRKIDTFHSGTTALSIVRQGDVIVIANIGDSRAVLATTPDDGNSVPSPIQLTIDFKPNLPQEAERIAQCNGRVFCLEDEPGTHRLWLPNGETPGLSMSRSFGDFCVKCFGLISLPDVTQRTVTNKDLFVVLATDGIWDVVSNQEAVQIVHSTVDRAKSARRLVDYATRAWKRKRPGIAVDDMSVIVLFLHSSPLHQQAFVVAPL 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46915633 46917301 - Lag0036472.1 Lac3g2944 603366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g2944 372 CDD PP2Cc 62 357 IPR001932 -
Lac3g2944 372 Gene3D - 56 359 IPR036457 -
Lac3g2944 372 ProSiteProfiles PPM-type phosphatase domain profile. 63 357 IPR001932 -
Lac3g2944 372 SUPERFAMILY PP2C-like 61 358 IPR036457 -
Lac3g2944 372 FunFam Probable protein phosphatase 2C 34 54 359 - -
Lac3g2944 372 Pfam Protein phosphatase 2C 84 336 IPR001932 -
Lac3g2944 372 PANTHER PROTEIN PHOSPHATASE 45 356 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac3g2944 372 SMART PP2C_4 56 355 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0889 Lac-Chr11:9618874 Lac3g2944 Lac-Chr3:46915633 2.90E-103 dispersed
Lac3g2944 Lac-Chr3:46915633 Lac6g2567 Lac-Chr6:43380901 2.10E-144 dispersed
Lac3g2944 Lac-Chr3:46915633 Lac4g1279 Lac-Chr4:30786009 2.30E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g2944 - - - 0.0