Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g3011 ATGAGATCAAATCTCATTCGCCTTTGTGGCCAAGCTGAGTCCCTTTTGGAGTCCCATTTCTCTGATCTCTTAGCCAAATTTGATTCCCCTCTTCACCATCTCCATGTCTTCCCTTACTTCTCTAATTACCTCAAACTTAGCCTCCTTGAATACTCCATCCTCCGCCGCCACTTCCCCGCCGTCCCCTCCGCCGTTGCCTTTGTCGGCTCCGGCCCTCTTCCTTTTACGTCCATCGTCCTCGCCACCCGCCACCTCACCGCCACTACCTTCCACAATTACGATCTCGACCCGCTTGCTAATTCCCAGGCGTCGAATTTGGTATCGTCGGATCCGGACTTGAAGACGAGGATGGTTTTTCACACGTGCGACATCGTGAAGGTGACAGAGGAGCTGAAACAGTACGAGGTAGTGTTTTTGGCAGCTCTTGTGGGAATGGAGAAAGAGGAGAAATTGAGAGTGATTGAGCATTTGTCTGAGTTCATGTCGGAAGGGGCTTATTTGATGGTGAGAAGTGCTCATGGAGGAAGGGCTTTTCTTTATCCTGTGGTTGAGGATTGTGATTTGGTAGGGTTTGAGGTTCTATCTGTGTTTCATCCCACCGACGAAGTTATAAACTCCGTTATACTCGCACGAAAAAAGACGAGATTCGAGGACGAGGACGAGGACGAGAACGAGACCGACGGTTGTTGTTTGTCTGTTAATTCAGACAAACAAGAGGAAGATGAAAATGAGAAGGTAATGATTAGTAGCGGTATTGAAAATGGTGTTGTGCATAATAATAATAATAATAAAAAATGTTCTGAGATTCAAAGCTTCAATAATCATGGAGGTATGATAGAGGAATTGGCCATGGAAGCTGAGTAA 864 46.41 MRSNLIRLCGQAESLLESHFSDLLAKFDSPLHHLHVFPYFSNYLKLSLLEYSILRRHFPAVPSAVAFVGSGPLPFTSIVLATRHLTATTFHNYDLDPLANSQASNLVSSDPDLKTRMVFHTCDIVKVTEELKQYEVVFLAALVGMEKEEKLRVIEHLSEFMSEGAYLMVRSAHGGRAFLYPVVEDCDLVGFEVLSVFHPTDEVINSVILARKKTRFEDEDEDENETDGCCLSVNSDKQEEDENEKVMISSGIENGVVHNNNNNKKCSEIQSFNNHGGMIEELAMEAE 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48185302 48186504 + Lag0036539.1 Lac3g3011 603433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g3011 287 Gene3D Vaccinia Virus protein VP39 1 214 IPR029063 -
Lac3g3011 287 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 217 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lac3g3011 287 Pfam Nicotianamine synthase protein 1 214 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lac3g3011 287 PANTHER NICOTIANAMINE SYNTHASE 3 1 234 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lac3g3011 287 MobiDBLite consensus disorder prediction 216 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g3011 K05953 - - csv:101218907 440.269
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0308 Lac-Chr3:2184560 Lac3g3011 Lac-Chr3:48185302 1.10E-65 dispersed
Lac3g3011 Lac-Chr3:48185302 Lac6g2538 Lac-Chr6:43167758 1.10E-73 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g2538 . 1 276 Nicotianamine Synthase Gene Family AT1G09240 61.0 2.5e-90 329.7
Lac3g3011 . 1 212 Nicotianamine Synthase Gene Family AT1G09240 64.0 2.7e-76 283.1
Lac3g0308 . 16 284 Nicotianamine Synthase Gene Family AT1G09240 55.1 2.3e-75 280.0
Lac6g2538 . 3 276 Nicotianamine Synthase Gene Family AT1G56430 60.7 1.5e-90 330.5
Lac3g0308 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 55.2 1.3e-78 290.8
Lac3g3011 . 1 248 Nicotianamine Synthase Gene Family AT1G56430 58.0 2.3e-78 290.0
Lac6g2538 . 1 276 Nicotianamine Synthase Gene Family AT5G04950 58.6 9.6e-90 327.8
Lac3g3011 . 1 212 Nicotianamine Synthase Gene Family AT5G04950 60.9 1.1e-74 277.7
Lac3g0308 . 18 281 Nicotianamine Synthase Gene Family AT5G04950 51.5 1.3e-73 274.2
Lac6g2538 . 1 276 Nicotianamine Synthase Gene Family AT5G56080 58.1 1.8e-88 323.6
Lac3g3011 . 1 212 Nicotianamine Synthase Gene Family AT5G56080 62.0 7.9e-76 281.6
Lac3g0308 . 18 281 Nicotianamine Synthase Gene Family AT5G56080 52.1 1.8e-72 270.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125