Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g3025 ATGGATGCGATTGTTTCTAACCTAGAAGAGCCGAGGAATTCCGATTCGACTGCGCAGCGACCGAGTAAACGCCGAAAAATCGAATCGGTGAATCAAGCGGCGGAGATTCGCGGCGCCGAATCGACGGATGTCGGAAGACGGTGGAGAACAGAGTCGGAGCAACAGATTTACTCTTCGAAACTAGTCGAGGCTCTCCATCGAGTAAACCAGAAATCTGTATCGCCGCCGGCGAGATCTTCGATCGAAGGCCGGAAAGTCCGCGAGACGGCGGACCGAGTCCTCGCAGGCGCCGCGAAAGGCAAGACGCGGTGGAGCAGAGCGATCTTGACAAATCGACTCGATCTCAAACTTAAGAAGCTGAAGAAGGCGAAACCGGCCGGAAACTGTAGCCGGCCGAAGAAATTGAAAATTAGGTCCGAGACGAAGAAATTGCCGGCAGTGCAGAGGAAAGTTCGAATTCTCGGGCGCCTGGTTCCCGGCTGCCGGAAAATCTCATTCCCGAACCTGCTCGAAGAAGCTACAGATTACATCGCCGCTCTACAGATGCAGGTCCGCGCCATGACAGCCGTCGCCGAGCTTCTCGCCGGCGCTCCGGCTGATCGTCAAAGCTTCAGAACGAATTCGTAG 627 55.5 MDAIVSNLEEPRNSDSTAQRPSKRRKIESVNQAAEIRGAESTDVGRRWRTESEQQIYSSKLVEALHRVNQKSVSPPARSSIEGRKVRETADRVLAGAAKGKTRWSRAILTNRLDLKLKKLKKAKPAGNCSRPKKLKIRSETKKLPAVQRKVRILGRLVPGCRKISFPNLLEEATDYIAALQMQVRAMTAVAELLAGAPADRQSFRTNS 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48374829 48375455 + Lag0036553.1 Lac3g3025 603447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g3025 208 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 48 194 IPR044660 GO:0006355(InterPro)
Lac3g3025 208 MobiDBLite consensus disorder prediction 16 31 - -
Lac3g3025 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983(InterPro)
Lac3g3025 208 CDD bHLH_AtIBH1_like 138 189 IPR044549 GO:0006355(InterPro)
Lac3g3025 208 MobiDBLite consensus disorder prediction 1 48 - -
Lac3g3025 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 196 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0971 Lac-Chr11:10690553 Lac3g3025 Lac-Chr3:48374829 9.80E-40 dispersed
Lac3g3025 Lac-Chr3:48374829 Lac7g0970 Lac-Chr7:8240581 4.10E-33 dispersed
Lac3g3025 Lac-Chr3:48374829 Lac6g2526 Lac-Chr6:43036652 8.30E-42 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g3025 - - - 0.0