Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g3041 ATGGCTGCTGGTGGTGATTTCTTGCCACCCATGGTTATGTTGGTTGTCCAATTCCTCTATGCAGGCTTGAACATTACATCAAAGTTAGCCATGGAGTTTGGGATGAATCCACTTGTTCTAGTTGCTTACAGGCAGATGTTTGCTACCATAGCCATAGCTCCTTGTGCTTATTGGTTCGAAAGAAAAGGGAGACCCAAGATTACAAAGCCTATCCTGTTTCAGATTCTACTGTGTTCCTTAACTGGGGCAACAGCTAACCAAGTTTTTTACTATGTTGGGTTAAAATATTCAACCCCCACCATCGCATGTGCATTGACTAATGTCCTGCCTGCTGCAACTTTTGTCCTCGCTGTTCTTTTCAGACAAGAATCTCTGGCGATCAAGACAAGTGCAGGTGCAGCCAAGGTGATCGGAACTGTTGTGTGTGTCGGAGGAGCAATGTTTCTGTCGTTCTACCGTGGACAAACCATCGAGCTGGGTGAATCTGGGGTTCATTGGAAGTATGCTGAGATTATGAGGGGGGAAAGTTCCACCAGCCAAGGCAGCAGCATATGGGGCTCTCTCTGCTTAATCATAAGCTCTGTTGCTTGGGCGGCTTGGTTTGTAATCCAAGCGAGAGTGAACGAGAAGTTTCCTGCTCCCTACACGAGCACGGCTCTCATGACTTTCATGGCAACGATTCAATGTGGAGCAATCGCCATAGGCGTTGAACACAAGTCTGCTGCAGCTTGGTCATTGAAAAACTCAATCAGGCTCGTCGGCGCTCTCTATTCGGGAGTGGCGTGCTCTGGGCTTGCATTTTGCCTAACCTCCTGGAGTATCCAAAAGAAAGGTCCTCTCTATGCCTCGGTTTTCAGCCCCTTCTTGCTCGTTATCGTGGCCATTTTCAGCTGGGCCTTCTTTCAAGAAAAATTATACGTAGGAACCGTTGTAGGTTCATTGTTGATTGTTGTTGGGCTATATGCTGTCCTATGGGGAAAGACCAAAGAGGTGAAACTACAACAAGATATCGAAATGGCGGCTGCAGCAGAGGCAAAGCTAGATGACTGTAATAACAAAGATGACTTGGAAGAACAGTCCTATGTGGTTTCAAATGCCAATACTCTCCATAAGTAA 1116 46.59 MAAGGDFLPPMVMLVVQFLYAGLNITSKLAMEFGMNPLVLVAYRQMFATIAIAPCAYWFERKGRPKITKPILFQILLCSLTGATANQVFYYVGLKYSTPTIACALTNVLPAATFVLAVLFRQESLAIKTSAGAAKVIGTVVCVGGAMFLSFYRGQTIELGESGVHWKYAEIMRGESSTSQGSSIWGSLCLIISSVAWAAWFVIQARVNEKFPAPYTSTALMTFMATIQCGAIAIGVEHKSAAAWSLKNSIRLVGALYSGVACSGLAFCLTSWSIQKKGPLYASVFSPFLLVIVAIFSWAFFQEKLYVGTVVGSLLIVVGLYAVLWGKTKEVKLQQDIEMAAAAEAKLDDCNNKDDLEEQSYVVSNANTLHK 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48667657 48670407 - Lag0036569.1 Lac3g3041 603463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g3041 371 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020(InterPro)
Lac3g3041 371 Pfam EamA-like transporter family 12 143 IPR000620 GO:0016020(InterPro)
Lac3g3041 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 143 - -
Lac3g3041 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 328 - -
Lac3g3041 371 PANTHER WAT1-RELATED PROTEIN 11 342 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lac3g3041 371 Coils Coil 333 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1864 Lac-Chr11:33603623 Lac3g3041 Lac-Chr3:48667657 1.70E-58 dispersed
Lac3g3041 Lac-Chr3:48667657 Lac8g1085 Lac-Chr8:22743759 8.60E-66 dispersed
Lac5g3095 Lac-Chr5:48609967 Lac3g3041 Lac-Chr3:48667657 1.60E-41 transposed
Lac3g3041 Lac-Chr3:48667657 Lac6g2512 Lac-Chr6:42916749 3.20E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g3041 - - - 0.0