Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g3065 ATGGATTATCGGGGTTATAGCAGTAGACTGGAAACAAACAACCCGAATAAAGGCTATGCTCAGGAGCAGGAATCTCTTGCTGATGACTTTATAGAGGATTTTCGCCTGCCCATCAACCATAAACCAACAGAAAATGTTGATCTTGATAATGTGGAACAGGCATCATTGGACACACAATTAACTTCATCGAATGTGGGATATAGGCTTCTCCAGAAGATGGGCTGGAAAGGGAAGGGACTAGGGAAGGATGAGCAAGGAATTATTGAGCCGATAAAATCTGGAATTAGAGATCCCAAACTAGGCATTGGAAAACAAGAAGAAGACGATTTTTTCACTGCAGAAGAAAATATCCAGAGGAAAAAACTTGATGTTGAGGTGGAAGAGACAGAGGAACATGCCAAAAAACGGGAGGTTTTAGCAGAACGTGAGGAGAAAATTCAAACTGAGGTCAAAGAAATACGCAAGGTTTTCTATTGTGATCTTTGCAACAAACAGTACAAATTGGCAATGGAATTTGAAGCTCATCTCAGCTCATATGATCACAATCATAGAAAGCGTTTTAAAGAAATGAGAGAAATGCATGGTACAAGCAGCCGTGATGACAGAAACAAGCGGGAACAGCAACGTGAGGAGAGAGAGATGGCAAAATTTGCTCAAATTGCGGATGCCCGAAAGAAGCAGCAGCAGATGCTGGAGCAACAAGAAAGATCAGCCGATGCTCCTGTTTCTACTGAACTTAGAAATGCTACATCACTTGCAGATCAGGATCAGCGAAAAACATTAAAATTTGGATTCTCTTCTAAAGGTGGCACCTCAAAGAACATTTTTGGTGGAGTCACAAAGAAACCAAAAGTAGCCACTGTAGCTTCAGTTTTTGGAAATGATAGTGACGATGAATAA 900 41.0 MDYRGYSSRLETNNPNKGYAQEQESLADDFIEDFRLPINHKPTENVDLDNVEQASLDTQLTSSNVGYRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGIGKQEEDDFFTAEENIQRKKLDVEVEETEEHAKKREVLAEREEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKEMREMHGTSSRDDRNKREQQREEREMAKFAQIADARKKQQQMLEQQERSADAPVSTELRNATSLADQDQRKTLKFGFSSKGGTSKNIFGGVTKKPKVATVASVFGNDSDDE 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48964027 48970404 - Lag0036593.1 Lac3g3065 603487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g3065 299 MobiDBLite consensus disorder prediction 7 21 - -
Lac3g3065 299 Pfam G-patch domain 63 103 IPR000467 GO:0003676(InterPro)
Lac3g3065 299 ProSitePatterns Zinc finger C2H2 type domain signature. 159 181 IPR013087 -
Lac3g3065 299 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 299 - -
Lac3g3065 299 MobiDBLite consensus disorder prediction 191 220 - -
Lac3g3065 299 MobiDBLite consensus disorder prediction 191 278 - -
Lac3g3065 299 SMART G-patch_5 60 105 IPR000467 GO:0003676(InterPro)
Lac3g3065 299 MobiDBLite consensus disorder prediction 1 23 - -
Lac3g3065 299 ProSiteProfiles G-patch domain profile. 62 107 IPR000467 GO:0003676(InterPro)
Lac3g3065 299 SUPERFAMILY beta-beta-alpha zinc fingers 138 190 IPR036236 -
Lac3g3065 299 MobiDBLite consensus disorder prediction 233 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0256 Lac-Chr11:2567835 Lac3g3065 Lac-Chr3:48964027 4.70E-06 transposed
Lac3g3065 Lac-Chr3:48964027 Lac4g0225 Lac-Chr4:4768412 6.00E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g3065 - - - 0.0