Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g3071 | ATGACTCGGAAGAAGGTGAAGCTGGCTTACATAGCCAATGACTCAGCCAGGAAGGCCACCTTCAAGAAGAGGAAGAGAGGGCTGATGAAGAAGGTCAGCGAACTCAGCACTCTCTGTGGGATTGAGGCTTGCGCCATCGTCTTCAGCCCTTACGACTCTCAGCCTGAGCTTTGGCCTTCCGCCCTCGGAGTCCAACGCGTCCTCTCTCACTTCAAGAAGATGCCCGAGATGGAGCAGAGCAAGAAGATGGTGAATCAAGAGACATTTCTGCGGCAGAGGATCGCAAAGGCGAACGAGCAGGTGAAGAAGATGAGGAAAGACAACCGAGAGAAGGAGATCACGCGGCTGATGTTCCAGAGCCTGACCGGCGCCAAAGGGCTGCACGGCCTCAACATGGTCGACTTGAACGACCTCGGTTGGCTCATCGACCAGAATCTCAAGGACATCACCAAACGCATCGACTCGCTTCGAAAGCCGTCACTGGCGCAGTCGGAGACCGTGGTCGAGAGGAACCCACCGCCACCGCTGCCGCCACCTCAGCCTCAGCCTCAGCCGCCACAGACGGCGGGCTGGCTGATGGAGCTGGTGAGCCCTCAGGATCAGATGGGGTTCGTTGGGGATGACATGCTTTTGCCGTTTGGAGATCACAGTTACAACCATAATGCCATGTGGTCCAATGCCTTTTTCCCTTAG | 693 | 56.42 | MTRKKVKLAYIANDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDSQPELWPSALGVQRVLSHFKKMPEMEQSKKMVNQETFLRQRIAKANEQVKKMRKDNREKEITRLMFQSLTGAKGLHGLNMVDLNDLGWLIDQNLKDITKRIDSLRKPSLAQSETVVERNPPPPLPPPQPQPQPPQTAGWLMELVSPQDQMGFVGDDMLLPFGDHSYNHNAMWSNAFFP | 230 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 49077950 | 49078728 | - | Lag0036599.1 | Lac3g3071 | 603493 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g3071 | 230 | SUPERFAMILY | SRF-like | 1 | 85 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac3g3071 | 230 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac3g3071 | 230 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac3g3071 | 230 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) | |
| Lac3g3071 | 230 | FunFam | agamous-like MADS-box protein AGL80 | 13 | 97 | - | - | |
| Lac3g3071 | 230 | Coils | Coil | 87 | 114 | - | - | |
| Lac3g3071 | 230 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 170 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Lac3g3071 | 230 | MobiDBLite | consensus disorder prediction | 170 | 186 | - | - | |
| Lac3g3071 | 230 | Gene3D | - | 13 | 97 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac3g3071 | 230 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 51 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac3g3071 | 230 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac3g3071 | 230 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac3g3071 | 230 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac3g3071 | 230 | MobiDBLite | consensus disorder prediction | 160 | 189 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g1488 | Lac-Chr10:14583819 | Lac3g3071 | Lac-Chr3:49077950 | 1.30E-64 | dispersed | |
| Lac10g2742 | Lac-Chr10:41865374 | Lac3g3071 | Lac-Chr3:49077950 | 1.60E-35 | dispersed | |
| Lac3g3071 | Lac-Chr3:49077950 | Lac9g0199 | Lac-Chr9:3086635 | 3.90E-08 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23667 | PF00319 | SRF-TF | 6.80E-19 | No_clan | Lac | TF |
Pathway information