Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g3071 ATGACTCGGAAGAAGGTGAAGCTGGCTTACATAGCCAATGACTCAGCCAGGAAGGCCACCTTCAAGAAGAGGAAGAGAGGGCTGATGAAGAAGGTCAGCGAACTCAGCACTCTCTGTGGGATTGAGGCTTGCGCCATCGTCTTCAGCCCTTACGACTCTCAGCCTGAGCTTTGGCCTTCCGCCCTCGGAGTCCAACGCGTCCTCTCTCACTTCAAGAAGATGCCCGAGATGGAGCAGAGCAAGAAGATGGTGAATCAAGAGACATTTCTGCGGCAGAGGATCGCAAAGGCGAACGAGCAGGTGAAGAAGATGAGGAAAGACAACCGAGAGAAGGAGATCACGCGGCTGATGTTCCAGAGCCTGACCGGCGCCAAAGGGCTGCACGGCCTCAACATGGTCGACTTGAACGACCTCGGTTGGCTCATCGACCAGAATCTCAAGGACATCACCAAACGCATCGACTCGCTTCGAAAGCCGTCACTGGCGCAGTCGGAGACCGTGGTCGAGAGGAACCCACCGCCACCGCTGCCGCCACCTCAGCCTCAGCCTCAGCCGCCACAGACGGCGGGCTGGCTGATGGAGCTGGTGAGCCCTCAGGATCAGATGGGGTTCGTTGGGGATGACATGCTTTTGCCGTTTGGAGATCACAGTTACAACCATAATGCCATGTGGTCCAATGCCTTTTTCCCTTAG 693 56.42 MTRKKVKLAYIANDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDSQPELWPSALGVQRVLSHFKKMPEMEQSKKMVNQETFLRQRIAKANEQVKKMRKDNREKEITRLMFQSLTGAKGLHGLNMVDLNDLGWLIDQNLKDITKRIDSLRKPSLAQSETVVERNPPPPLPPPQPQPQPPQTAGWLMELVSPQDQMGFVGDDMLLPFGDHSYNHNAMWSNAFFP 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49077950 49078728 - Lag0036599.1 Lac3g3071 603493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g3071 230 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac3g3071 230 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac3g3071 230 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac3g3071 230 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Lac3g3071 230 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Lac3g3071 230 Coils Coil 87 114 - -
Lac3g3071 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 170 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac3g3071 230 MobiDBLite consensus disorder prediction 170 186 - -
Lac3g3071 230 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac3g3071 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac3g3071 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac3g3071 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac3g3071 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac3g3071 230 MobiDBLite consensus disorder prediction 160 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g3071 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1488 Lac-Chr10:14583819 Lac3g3071 Lac-Chr3:49077950 1.30E-64 dispersed
Lac10g2742 Lac-Chr10:41865374 Lac3g3071 Lac-Chr3:49077950 1.60E-35 dispersed
Lac3g3071 Lac-Chr3:49077950 Lac9g0199 Lac-Chr9:3086635 3.90E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g0329 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 2.4e-95 346.7
Lac10g0086 . 1 262 Type I MADS-box Gene Family AT2G03060 50.4 1.5e-65 247.7
Lac5g2636 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 4.1e-38 156.0
Lac5g2636 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 1.8e-50 197.2
Lac5g2008 . 1 230 Type I MADS-box Gene Family AT1G77950 51.0 3.9e-54 209.1
Lac3g3071 . 1 157 Type I MADS-box Gene Family AT5G48670 67.5 7.7e-55 211.8
Lac10g1488 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.0e-47 187.2
Lac13g0329 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 2.4e-95 346.7
Lac10g0086 . 1 262 Type I MADS-box Gene Family AT2G03060 50.4 1.5e-65 247.7
Lac5g2636 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 4.1e-38 156.0
Lac5g2636 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 1.8e-50 197.2
Lac5g2008 . 1 230 Type I MADS-box Gene Family AT1G77950 51.0 3.9e-54 209.1
Lac3g3071 . 1 157 Type I MADS-box Gene Family AT5G48670 67.5 7.7e-55 211.8
Lac10g1488 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.0e-47 187.2
Lac13g0329 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 2.4e-95 346.7
Lac10g0086 . 1 262 Type I MADS-box Gene Family AT2G03060 50.4 1.5e-65 247.7
Lac5g2636 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 1.8e-50 197.2
Lac3g3071 . 1 157 Type I MADS-box Gene Family AT5G48670 67.5 7.7e-55 211.8
Lac10g1488 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.0e-47 187.2
Lac5g2636 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 4.1e-38 156.0
Lac5g2008 . 1 230 Type I MADS-box Gene Family AT1G77950 51.0 3.9e-54 209.1
Lac13g0329 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 2.4e-95 346.7
Lac10g0086 . 1 262 Type I MADS-box Gene Family AT2G03060 50.4 1.5e-65 247.7
Lac5g2636 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 1.8e-50 197.2
Lac3g3071 . 1 157 Type I MADS-box Gene Family AT5G48670 67.5 7.7e-55 211.8
Lac10g1488 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.0e-47 187.2
Lac5g2636 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 4.1e-38 156.0
Lac5g2008 . 1 230 Type I MADS-box Gene Family AT1G77950 51.0 3.9e-54 209.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23667 PF00319 SRF-TF 6.80E-19 No_clan Lac TF