Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g3084 ATGGGCATTAAGGGTTTAACCAAGCTTTTAGCTGACAATGCTCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTCGGCCGCAAAATCGCAATCGATGCCAGCATGAGTATTTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACGGAGATGCTGACCAACGAAGCTGGTGAAGTCACAAGCCATTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCACCCGATTTGAAAAAACAAGAACTTGCAAAACGTTATTCAAAGAGAGCAGATGCTACTGAGGACCTGGCAGATGCAATCGAGGTTGGCAACAAGGAGGACATCGAGAAATTCAGTAAAAGGACGGTGAAGGTTACAAAACAGCACAATGATGACTGTAAAAGACTCTTGAGACTCATGGGAGTGCCTGTGATTGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCGCTTTGCAAGTTAGGAAAGGTTTATGCTGTGGCGTCGGAAGACATGGATTCATTAACATTTGGGTCTCCCAAATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTGGGAAGATTTTGGAGGAGTTGAACCTTACCATGGATCAATTTGTCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGATAGTATTCGAGAGGATTTTAATAAGAAATACCTTTTGCACATGGTATCAGAGCAAAGGCAACCGCCGCCGTTACCTGAGTGCAAGGAGATCCGCAGCAGCCGTCTGATCCAATCGCGACCCACGACTAGGACTCGACCCGCGATTTTGCGCCGTGACCCGTCACCTCTGCAAGTCGTTCCTTTCTGTCCACTCCGTGCTCGCGATTTTGCGCCGCCGCCGTTTGCGGTTTTGCTCCGTCAACTCCGACCGCTCGTTTTCGTCAACTCCGGCCACTCGCCTGGGATAGATTACTTTCTTTTTCGGAGTAACAATCAGTCCACCTCCACTGCTAATGTTGTTGACTCTCATCAATTCAATCAAGAGCAAATTGATCAACTCCTGAAGCTGCTAAAGGTCACTTCGTCATCTGGTAATCCTAGTGTTTCCTTGGCACAAACAGGTAATTATCCTCTAGCTTTATCTTGTCTTAATTCATCTCCGTGGGTTATAGACTCCGGAGCATCTGACCATATGACTAGTTCCTCCCTTCTGTTTACCTCATACTCTCCCTTGTATTGCAATGAACAAATTCGAATTGCCGATGGTAGTTTTACTCCTATTGCAGGAAAAGGAACTATCTCGTTGACTAAAAATATTACCTTACAATCTGTTCTCCATGTTCCTAAATTAGCCTGTAATTTGTTATCTGTCAGTAAAATTTCTAAGGATGCTAATTGTCGTGTTACTTTCTTTGAAACTCACTGCATCTTTCAAGATCAGGACTCGGGGGAGATGATTGGGCGTGCTAGGATGCTGGATGGTCTCTACTATTTTGATGATTCTCCAACTAGTGATAAAAAAGTTCAGGGCCTAAGTAGTGTTAGTTCTTCTTCTGTTAAAGAAACAATCATGCTTTGGCATCGTAGACTAGGACATCCCAAGGATTTTTTGAAGGATAAAGGAATTTTCCACCAATCTACCTGTCGTGATACTCCACAACAAAATGGGATTGCTGAGCGAAAAAATAGACATTTACTCGATGTTGCTCGTGCTATTATGTTTTATATGCATGTTCCTCACTATTTGTGGGAAGACGCAGTCCTTACCGCTGCCTTTTTCATAAACCGGATGCCTTCTAAGATTTTGGCCTTTAAAACTCCTCTTGATCAATTTAGAAAATTTTACCCCACTGTTTATACTAGAAGGACATTACATCAAAAGAACGGGGATCAGATAGTGGACTTGTCACAATACCAATCTAATGCTCCGACAAATGATACTGAAGATTCAGGTAACCAATCTTTATCTGATATCTCTGACCTTGATATCCCAATAGCCCATAGGAAAGGTGTCCGTAATTGCACCAAATACCCTATTGCAAATTACCTTTCTTATCATAGATTGTCTGATAATCATAAAGCCTTCAACTCTAGGATAACCAACCTATTTATTCCAAGGAACATACAGGAGGCCCAAAATGATCCGAATTGGAATTTAGCAGTTATGGAAGAGATGAATGCGCTAAAACAGAATTGTACATGGGATGTAGTTGAACTACCAAAAGATAAGAAAACGGTAGGGTGCAAATGGGTATTCACTATAAAGTGCAAAGCTGATGGTGATATTGAACGATACAAAGCCAGATTAGTTGCTAAAGGCTTTACCCAGACCTATGGAATTGATTATCAAGAAACATTTGCTCCAGTGGCTAAGATTAACTCTATAAGAGTACTTTTATCTATTTCTGTTAATTCAGATTGGCCTCTTTATCAGCTTGATGTAAAAAATGCATTCCTCAATGGTGATCTTGAAGAGGAAGTATTTAGGACTTACCACCAGAGTCAAGCAGATCATACCATTTTCTATAAGCACACAGGAAATGACAAGATGGTTGTTTTAATAGTGTATGTTGATGATATCATCCTTACAGGTAGCACAACAGATAGGAGATCTACTTCTGGTTACTGTTCATTTGTTGGAGGAAATCTAGTTAACTGGCGTAGTAAAAAACAAAGTGTGCTAGCCAAAAGTAGTGCAGAAGCAGAGTTCAGAGCTTTAGCTCATGGCATTTGTGAAGGTATTTGGATAAAACGACTGCTTGAAGAATTGAAATTTGTCCAAACACAACCTATGCGTGTCTACTGTGACAATAAGGCAGCCATCTCCATAGCTCACAATCCAGTCCTTCACGATAGGACAAAGCATATTGAAGTTGATAAACACTTTATAAAGGAGAAGATTGATACTGGAGTAATATGTATCCCCTATCTCCCTACAACGGAGCAAACTGCTGATGTGCTAACTAAGGGACTTCCAAAATTACGATTTGACAAGTTGATTAACAAGCTGACAATGGAAGATATCTTCAAACCAGCTTGA 3069 41.28 MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPKFLRHLMDPSSRKIPVMEFEVGKILEELNLTMDQFVDLCILSGCDYCDSIREDFNKKYLLHMVSEQRQPPPLPECKEIRSSRLIQSRPTTRTRPAILRRDPSPLQVVPFCPLRARDFAPPPFAVLLRQLRPLVFVNSGHSPGIDYFLFRSNNQSTSTANVVDSHQFNQEQIDQLLKLLKVTSSSGNPSVSLAQTGNYPLALSCLNSSPWVIDSGASDHMTSSSLLFTSYSPLYCNEQIRIADGSFTPIAGKGTISLTKNITLQSVLHVPKLACNLLSVSKISKDANCRVTFFETHCIFQDQDSGEMIGRARMLDGLYYFDDSPTSDKKVQGLSSVSSSSVKETIMLWHRRLGHPKDFLKDKGIFHQSTCRDTPQQNGIAERKNRHLLDVARAIMFYMHVPHYLWEDAVLTAAFFINRMPSKILAFKTPLDQFRKFYPTVYTRRTLHQKNGDQIVDLSQYQSNAPTNDTEDSGNQSLSDISDLDIPIAHRKGVRNCTKYPIANYLSYHRLSDNHKAFNSRITNLFIPRNIQEAQNDPNWNLAVMEEMNALKQNCTWDVVELPKDKKTVGCKWVFTIKCKADGDIERYKARLVAKGFTQTYGIDYQETFAPVAKINSIRVLLSISVNSDWPLYQLDVKNAFLNGDLEEEVFRTYHQSQADHTIFYKHTGNDKMVVLIVYVDDIILTGSTTDRRSTSGYCSFVGGNLVNWRSKKQSVLAKSSAEAEFRALAHGICEGIWIKRLLEELKFVQTQPMRVYCDNKAAISIAHNPVLHDRTKHIEVDKHFIKEKIDTGVICIPYLPTTEQTADVLTKGLPKLRFDKLINKLTMEDIFKPA 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49320791 49336761 + Lag0036612.1 Lac3g3084 603506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g3084 1022 Gene3D - 541 629 IPR036397 GO:0003676(InterPro)
Lac3g3084 1022 Pfam Pol polyprotein, beta-barrel domain 398 472 IPR054722 -
Lac3g3084 1022 SUPERFAMILY DNA/RNA polymerases 741 968 IPR043502 -
Lac3g3084 1022 SMART xpgn3 1 108 IPR006085 GO:0004518(InterPro)
Lac3g3084 1022 Hamap Flap endonuclease 1 [fen]. 1 338 IPR023426 GO:0016788(InterPro)
Lac3g3084 1022 Pfam XPG I-region 150 234 IPR006086 GO:0004518(InterPro)
Lac3g3084 1022 Gene3D - 223 249 - -
Lac3g3084 1022 ProSiteProfiles Integrase catalytic domain profile. 544 625 IPR001584 GO:0015074(InterPro)
Lac3g3084 1022 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Lac3g3084 1022 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Lac3g3084 1022 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Lac3g3084 1022 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Lac3g3084 1022 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Lac3g3084 1022 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Lac3g3084 1022 CDD RNase_HI_RT_Ty1 864 1003 - -
Lac3g3084 1022 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788(InterPro)
Lac3g3084 1022 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518(InterPro)
Lac3g3084 1022 SMART xpgineu 147 219 IPR006086 GO:0004518(InterPro)
Lac3g3084 1022 SUPERFAMILY Ribonuclease H-like 522 619 IPR012337 -
Lac3g3084 1022 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 241 IPR006084 GO:0008409(PANTHER)|GO:0017108(PANTHER)
Lac3g3084 1022 FunFam Flap endonuclease 1 10 222 - -
Lac3g3084 1022 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788(InterPro)
Lac3g3084 1022 Gene3D - 10 222 - -
Lac3g3084 1022 CDD PIN_FEN1 4 219 - -
Lac3g3084 1022 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 741 838 IPR013103 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g3084 K04799 - - csv:101204273 469.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g3084 Lac-Chr3:49320791 Lac8g2122 Lac-Chr8:39610565 1.10E-296 dispersed
Lac3g1901 Lac-Chr3:21345120 Lac3g3084 Lac-Chr3:49320791 2.50E-29 wgd
Lac3g3084 Lac-Chr3:49320791 Lac9g0125 Lac-Chr9:1954236 2.10E-26 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g1517 . 659 1335 Core DNA Replication Machinery Family AT4G14700 66.0 8.5e-260 894.0
Lac12g1517 . 659 1335 Core DNA Replication Machinery Family AT4G12620 67.8 6.1e-266 914.4
Lac6g0338 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.2 7.3e-144 507.7
Lac11g1707 . 15 445 Core DNA Replication Machinery Family AT5G16690 53.0 3.3e-122 436.8
Lac13g1196 . 146 556 Core DNA Replication Machinery Family AT2G01120 63.4 3.2e-149 525.8
Lac13g2285 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.9 1.5e-94 343.6
Lac12g0052 . 61 854 Core DNA Replication Machinery Family AT1G79150 60.2 5.7e-251 864.8
Lac7g1551 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1345.5
Lac1g3505 . 93 642 Core DNA Replication Machinery Family AT5G46280 82.9 1.3e-262 902.9
Lac4g1433 . 1 845 Core DNA Replication Machinery Family AT2G16440 73.5 0.0e+00 1183.3
Lac6g2877 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1117.1
Lac7g1919 . 9 358 Core DNA Replication Machinery Family AT2G07690 68.4 3.5e-132 469.9
Lac1g3681 . 1 832 Core DNA Replication Machinery Family AT5G44635 72.7 0.0e+00 1191.8
Lac4g2531 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.8 0.0e+00 1221.8
Lac9g2413 . 3 234 Core DNA Replication Machinery Family AT2G29680 65.1 9.3e-79 292.0
Lac12g1686 . 126 352 Core DNA Replication Machinery Family AT2G29680 55.1 1.5e-76 284.6
Lac12g1686 . 100 353 Core DNA Replication Machinery Family AT1G07270 53.1 1.5e-75 281.2
Lac9g2413 . 3 204 Core DNA Replication Machinery Family AT1G07270 65.8 1.6e-69 261.2
Lac4g1977 . 1 593 Core DNA Replication Machinery Family AT3G25100 77.4 1.4e-259 892.9
Lac10g3047 . 12 781 Core DNA Replication Machinery Family AT3G09660 73.4 0.0e+00 1102.8
Lac12g0230 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.9 2.2e-287 985.3
Lac9g1824 . 1 411 Core DNA Replication Machinery Family AT2G20980 56.2 1.9e-119 426.8
Lac2g0961 . 1 965 Core DNA Replication Machinery Family AT1G77320 51.0 2.4e-264 909.4
Lac4g2802 . 1 200 Core DNA Replication Machinery Family AT1G80190 69.5 7.7e-77 284.3
Lac3g3108 . 144 288 Core DNA Replication Machinery Family AT3G12530 73.8 7.5e-61 230.7
Lac8g2885 . 1 184 Core DNA Replication Machinery Family AT1G19080 68.5 2.4e-69 259.2
Lac8g2885 . 1 184 Core DNA Replication Machinery Family AT3G55490 68.5 2.4e-69 259.2
Lac7g0224 . 1 164 Core DNA Replication Machinery Family AT5G49010 62.0 4.5e-50 195.3
Lac9g1232 . 1 677 Core DNA Replication Machinery Family AT5G67100 62.2 2.6e-262 903.3
Lac9g1235 . 1 803 Core DNA Replication Machinery Family AT5G67100 53.5 4.6e-214 743.0
Lac13g0083 . 4 622 Core DNA Replication Machinery Family AT1G67630 62.1 6.2e-218 754.6
Lac4g2157 . 1 432 Core DNA Replication Machinery Family AT1G67320 63.6 1.6e-173 606.7
Lac2g2776 . 1 430 Core DNA Replication Machinery Family AT5G41880 64.8 4.3e-168 588.6
Lac1g2327 . 1 1084 Core DNA Replication Machinery Family AT5G63960 79.5 0.0e+00 1754.2
Lac10g2621 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.8 1.1e-205 713.4
Lac4g2157 . 1 432 Core DNA Replication Machinery Family AT1G67320 63.6 1.6e-173 606.7
Lac9g2692 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.1 0.0e+00 2957.9
Lac10g0329 . 5 2043 Core DNA Replication Machinery Family AT1G08260 68.3 0.0e+00 2828.9
Lac9g2692 . 9 2201 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2916.3
Lac10g0329 . 28 2156 Core DNA Replication Machinery Family AT2G27120 65.6 0.0e+00 2797.7
Lac3g2732 . 7 535 Core DNA Replication Machinery Family AT5G22110 60.2 1.1e-177 620.5
Lac4g1082 . 9 338 Core DNA Replication Machinery Family AT5G22110 61.7 6.0e-123 438.7
Lac9g2747 . 52 989 Core DNA Replication Machinery Family AT5G22010 61.6 3.3e-308 1055.0
Lac1g1062 . 196 391 Core DNA Replication Machinery Family AT5G22010 69.4 5.8e-71 266.9
Lac12g1394 . 81 200 Core DNA Replication Machinery Family AT5G22010 76.1 6.0e-52 203.8
Lac4g0414 . 216 351 Core DNA Replication Machinery Family AT5G22010 59.3 1.9e-42 172.2
Lac5g0598 . 1 334 Core DNA Replication Machinery Family AT1G63160 90.7 9.5e-173 603.6
Lac1g1629 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.6 1.2e-178 623.2
Lac2g0958 . 40 373 Core DNA Replication Machinery Family AT1G21690 81.5 5.4e-152 534.6
Lac8g1831 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 2.6e-155 545.8
Lac6g3094 . 26 618 Core DNA Replication Machinery Family AT2G06510 69.0 1.4e-254 876.3
Lac5g0150 . 34 700 Core DNA Replication Machinery Family AT2G06510 52.1 1.9e-195 679.9
Lac3g0557 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.6 8.6e-249 857.1
Lac5g0150 . 10 809 Core DNA Replication Machinery Family AT5G45400 51.9 9.4e-225 777.7
Lac3g0557 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.9 1.5e-243 839.7
Lac5g0150 . 10 795 Core DNA Replication Machinery Family AT4G19130 55.1 6.6e-225 778.1
Lac3g3084 . 1 240 Core DNA Replication Machinery Family AT5G26680 92.1 2.0e-124 443.4
Lac3g3088 . 45 184 Core DNA Replication Machinery Family AT5G26680 76.4 8.2e-57 218.8
Lac7g0388 . 1 1119 Core DNA Replication Machinery Family AT1G08840 52.3 1.3e-297 1020.0
Lac7g0436 . 129 247 Core DNA Replication Machinery Family AT1G08840 72.5 3.0e-39 161.8
Lac7g1212 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 3.7e-114 408.7
Lac9g2623 . 44 804 Core DNA Replication Machinery Family AT1G08130 69.5 2.6e-298 1021.9
Lac9g2623 . 204 804 Core DNA Replication Machinery Family AT1G49250 69.3 2.0e-243 839.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006601 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 2 1 1 1 1 1 2 2 1 1 3 2 1 37