Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g3084 ATGGGCATTAAGGGTTTAACCAAGCTTTTAGCTGACAATGCTCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTCGGCCGCAAAATCGCAATCGATGCCAGCATGAGTATTTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACGGAGATGCTGACCAACGAAGCTGGTGAAGTCACAAGCCATTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCACCCGATTTGAAAAAACAAGAACTTGCAAAACGTTATTCAAAGAGAGCAGATGCTACTGAGGACCTGGCAGATGCAATCGAGGTTGGCAACAAGGAGGACATCGAGAAATTCAGTAAAAGGACGGTGAAGGTTACAAAACAGCACAATGATGACTGTAAAAGACTCTTGAGACTCATGGGAGTGCCTGTGATTGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCGCTTTGCAAGTTAGGAAAGGTTTATGCTGTGGCGTCGGAAGACATGGATTCATTAACATTTGGGTCTCCCAAATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTGGGAAGATTTTGGAGGAGTTGAACCTTACCATGGATCAATTTGTCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGATAGTATTCGAGAGGATTTTAATAAGAAATACCTTTTGCACATGGTATCAGAGCAAAGGCAACCGCCGCCGTTACCTGAGTGCAAGGAGATCCGCAGCAGCCGTCTGATCCAATCGCGACCCACGACTAGGACTCGACCCGCGATTTTGCGCCGTGACCCGTCACCTCTGCAAGTCGTTCCTTTCTGTCCACTCCGTGCTCGCGATTTTGCGCCGCCGCCGTTTGCGGTTTTGCTCCGTCAACTCCGACCGCTCGTTTTCGTCAACTCCGGCCACTCGCCTGGGATAGATTACTTTCTTTTTCGGAGTAACAATCAGTCCACCTCCACTGCTAATGTTGTTGACTCTCATCAATTCAATCAAGAGCAAATTGATCAACTCCTGAAGCTGCTAAAGGTCACTTCGTCATCTGGTAATCCTAGTGTTTCCTTGGCACAAACAGGTAATTATCCTCTAGCTTTATCTTGTCTTAATTCATCTCCGTGGGTTATAGACTCCGGAGCATCTGACCATATGACTAGTTCCTCCCTTCTGTTTACCTCATACTCTCCCTTGTATTGCAATGAACAAATTCGAATTGCCGATGGTAGTTTTACTCCTATTGCAGGAAAAGGAACTATCTCGTTGACTAAAAATATTACCTTACAATCTGTTCTCCATGTTCCTAAATTAGCCTGTAATTTGTTATCTGTCAGTAAAATTTCTAAGGATGCTAATTGTCGTGTTACTTTCTTTGAAACTCACTGCATCTTTCAAGATCAGGACTCGGGGGAGATGATTGGGCGTGCTAGGATGCTGGATGGTCTCTACTATTTTGATGATTCTCCAACTAGTGATAAAAAAGTTCAGGGCCTAAGTAGTGTTAGTTCTTCTTCTGTTAAAGAAACAATCATGCTTTGGCATCGTAGACTAGGACATCCCAAGGATTTTTTGAAGGATAAAGGAATTTTCCACCAATCTACCTGTCGTGATACTCCACAACAAAATGGGATTGCTGAGCGAAAAAATAGACATTTACTCGATGTTGCTCGTGCTATTATGTTTTATATGCATGTTCCTCACTATTTGTGGGAAGACGCAGTCCTTACCGCTGCCTTTTTCATAAACCGGATGCCTTCTAAGATTTTGGCCTTTAAAACTCCTCTTGATCAATTTAGAAAATTTTACCCCACTGTTTATACTAGAAGGACATTACATCAAAAGAACGGGGATCAGATAGTGGACTTGTCACAATACCAATCTAATGCTCCGACAAATGATACTGAAGATTCAGGTAACCAATCTTTATCTGATATCTCTGACCTTGATATCCCAATAGCCCATAGGAAAGGTGTCCGTAATTGCACCAAATACCCTATTGCAAATTACCTTTCTTATCATAGATTGTCTGATAATCATAAAGCCTTCAACTCTAGGATAACCAACCTATTTATTCCAAGGAACATACAGGAGGCCCAAAATGATCCGAATTGGAATTTAGCAGTTATGGAAGAGATGAATGCGCTAAAACAGAATTGTACATGGGATGTAGTTGAACTACCAAAAGATAAGAAAACGGTAGGGTGCAAATGGGTATTCACTATAAAGTGCAAAGCTGATGGTGATATTGAACGATACAAAGCCAGATTAGTTGCTAAAGGCTTTACCCAGACCTATGGAATTGATTATCAAGAAACATTTGCTCCAGTGGCTAAGATTAACTCTATAAGAGTACTTTTATCTATTTCTGTTAATTCAGATTGGCCTCTTTATCAGCTTGATGTAAAAAATGCATTCCTCAATGGTGATCTTGAAGAGGAAGTATTTAGGACTTACCACCAGAGTCAAGCAGATCATACCATTTTCTATAAGCACACAGGAAATGACAAGATGGTTGTTTTAATAGTGTATGTTGATGATATCATCCTTACAGGTAGCACAACAGATAGGAGATCTACTTCTGGTTACTGTTCATTTGTTGGAGGAAATCTAGTTAACTGGCGTAGTAAAAAACAAAGTGTGCTAGCCAAAAGTAGTGCAGAAGCAGAGTTCAGAGCTTTAGCTCATGGCATTTGTGAAGGTATTTGGATAAAACGACTGCTTGAAGAATTGAAATTTGTCCAAACACAACCTATGCGTGTCTACTGTGACAATAAGGCAGCCATCTCCATAGCTCACAATCCAGTCCTTCACGATAGGACAAAGCATATTGAAGTTGATAAACACTTTATAAAGGAGAAGATTGATACTGGAGTAATATGTATCCCCTATCTCCCTACAACGGAGCAAACTGCTGATGTGCTAACTAAGGGACTTCCAAAATTACGATTTGACAAGTTGATTAACAAGCTGACAATGGAAGATATCTTCAAACCAGCTTGA 3069 41.28 MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPKFLRHLMDPSSRKIPVMEFEVGKILEELNLTMDQFVDLCILSGCDYCDSIREDFNKKYLLHMVSEQRQPPPLPECKEIRSSRLIQSRPTTRTRPAILRRDPSPLQVVPFCPLRARDFAPPPFAVLLRQLRPLVFVNSGHSPGIDYFLFRSNNQSTSTANVVDSHQFNQEQIDQLLKLLKVTSSSGNPSVSLAQTGNYPLALSCLNSSPWVIDSGASDHMTSSSLLFTSYSPLYCNEQIRIADGSFTPIAGKGTISLTKNITLQSVLHVPKLACNLLSVSKISKDANCRVTFFETHCIFQDQDSGEMIGRARMLDGLYYFDDSPTSDKKVQGLSSVSSSSVKETIMLWHRRLGHPKDFLKDKGIFHQSTCRDTPQQNGIAERKNRHLLDVARAIMFYMHVPHYLWEDAVLTAAFFINRMPSKILAFKTPLDQFRKFYPTVYTRRTLHQKNGDQIVDLSQYQSNAPTNDTEDSGNQSLSDISDLDIPIAHRKGVRNCTKYPIANYLSYHRLSDNHKAFNSRITNLFIPRNIQEAQNDPNWNLAVMEEMNALKQNCTWDVVELPKDKKTVGCKWVFTIKCKADGDIERYKARLVAKGFTQTYGIDYQETFAPVAKINSIRVLLSISVNSDWPLYQLDVKNAFLNGDLEEEVFRTYHQSQADHTIFYKHTGNDKMVVLIVYVDDIILTGSTTDRRSTSGYCSFVGGNLVNWRSKKQSVLAKSSAEAEFRALAHGICEGIWIKRLLEELKFVQTQPMRVYCDNKAAISIAHNPVLHDRTKHIEVDKHFIKEKIDTGVICIPYLPTTEQTADVLTKGLPKLRFDKLINKLTMEDIFKPA 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49320791 49336761 + Lag0036612.1 Lac3g3084 603506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g3084 1022 Gene3D - 541 629 IPR036397 GO:0003676(InterPro)
Lac3g3084 1022 Pfam Pol polyprotein, beta-barrel domain 398 472 IPR054722 -
Lac3g3084 1022 SUPERFAMILY DNA/RNA polymerases 741 968 IPR043502 -
Lac3g3084 1022 SMART xpgn3 1 108 IPR006085 GO:0004518(InterPro)
Lac3g3084 1022 Hamap Flap endonuclease 1 [fen]. 1 338 IPR023426 GO:0016788(InterPro)
Lac3g3084 1022 Pfam XPG I-region 150 234 IPR006086 GO:0004518(InterPro)
Lac3g3084 1022 Gene3D - 223 249 - -
Lac3g3084 1022 ProSiteProfiles Integrase catalytic domain profile. 544 625 IPR001584 GO:0015074(InterPro)
Lac3g3084 1022 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Lac3g3084 1022 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Lac3g3084 1022 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Lac3g3084 1022 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Lac3g3084 1022 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Lac3g3084 1022 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Lac3g3084 1022 CDD RNase_HI_RT_Ty1 864 1003 - -
Lac3g3084 1022 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788(InterPro)
Lac3g3084 1022 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518(InterPro)
Lac3g3084 1022 SMART xpgineu 147 219 IPR006086 GO:0004518(InterPro)
Lac3g3084 1022 SUPERFAMILY Ribonuclease H-like 522 619 IPR012337 -
Lac3g3084 1022 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 241 IPR006084 GO:0008409(PANTHER)|GO:0017108(PANTHER)
Lac3g3084 1022 FunFam Flap endonuclease 1 10 222 - -
Lac3g3084 1022 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788(InterPro)
Lac3g3084 1022 Gene3D - 10 222 - -
Lac3g3084 1022 CDD PIN_FEN1 4 219 - -
Lac3g3084 1022 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 741 838 IPR013103 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g3084 Lac-Chr3:49320791 Lac8g2122 Lac-Chr8:39610565 1.10E-296 dispersed
Lac3g1901 Lac-Chr3:21345120 Lac3g3084 Lac-Chr3:49320791 2.50E-29 wgd
Lac3g3084 Lac-Chr3:49320791 Lac9g0125 Lac-Chr9:1954236 2.10E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g3084 K04799 - csv:101204273 469.544