Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g0028 ATGGGCGAGGCAGTTATGGTGAGCTCCGAGGATGTGGATTTGGATTTGGATTTGGATTTGGATTATGTCAGAGCCGACATCGACATCGACATCGACGACTTGGCGGAGGCAGAGAGTATGGGCACTCACAAACCCAGCAGAGAAGGTAGTTCAACTGGGGTTGGCTTCGGGATTAAGTGGGAGCGCTTTTTGCCCAAGATGATGCTCAGGGTCTTGCTCGTCGAAGCCGACGATTCCACCAGACAGATTATCACTGCCCTTCTCCGCAAGTGCTGCTACCGAGTTGCTGCTGTTCCTGATGGCTTGAAAGCATGGGAGATTCTCAAAGAAAGGCCCCGTAATGTCGATCTTATACTGGCGGAAGTTGAATTGCCATCAATCTCTGGATTTGCTCTGCTAACTCTGATCATGGAGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCATCTGAAGATTCTATCAGCACCGTTTATAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTCAAGCCCTTAAGGAGAAATGAGCTGAGGAATCTGTGGCAACATGTTTGGAGAAGACAAGCATCATCCAATGTGAGAACTGACATTCAAGAAAAGGTGGAAGTCACTTCAGAAAATGAGACTGCAAGCAACCACTCAACTGGTTATGTTGCTGGAGTTCAGAGAACTAGGAATAACAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCTTGTACGAAGGTAGATTTCGAGGCTGGAAGTAAGATGCAGGAAAATTCACAGCCTAGACAGGGAAAAGCCTCTCCGAATGCCTTCGAGCTACAGAAAGATGAACGTCACATTAATTTGAGTCAGAGATTGGTTATGCATGAAAATGAAGCTGGAGGATTGGCAATGAGTTGCTATGTCAATGCTGATTTACCAATTACACTAAGCATGGGTCTTGAGCCAATCAATGATGGGAGAAGTCCTAATATTGCTAGTGAAGCAGGTGATAATAAGGATTTGCTTGCCTACCCCTCCAGAGATGCAACTGTCTTGAATCATGCTTGTATCAAGTATCCTGATAACTACCAAAAAAGTTCTCCTTCCTCCAATGCTGCCACAAACAATTTCGGTTCTGCTCTTCATTTGGATCTTTCCCTGAGAAGATGTCAACCTAATGATTTTGAGGACTGTGCTGCAGAAGGACGGGCTACCCTCAAGCATTCTAGTGCTTCAGCTTTCACAAGATACACTTTCAGGCCATTGCAAACACTTCAAGCAAAATCAAGCAGTATCTGTGATGAGCAAAAGGAATTTGTAAGCAATCCCGAGCATATTGGAAGTATAGCTGCTACTTCTACATCTGACACGATTAATGCAACACTAAGTCTGCAAAAGATTAATACTTCTATGCCTCTGGTAACCAGTCAATCTACTCAGTCCGAAGTTGCAAGATCAAGTACTTCAGAGACGGTAATCCCTCCTCAAGTTTCAGTGAAAGATTTGATGTCTAATAATCCATGCTCGGGCTACAGCTCTTTACTTTCTCCCAACTTCTGTGCACAACGGGGTACCCCATCATCTCCATGCCCAACTTTAGTCACTCATCCAGAACCCATCTTTGCAAAACAGACGGTTTATCCCTTAAACCTTGAGAATCATAATTTGGAGCAGTTTCTGAACCATCATCACAACGTAAGCAATCCAGCAAGCCGAAAGATAGAGAACTCAGGGCAACAGTTGGAGTCTGCAGAAAATCAAGGCCATATATCGCCTACAACTGATCACAGTGCAAACAGTAGTCTATGTGGTGGTAATACAACTCATGTTCGAAGCGTGGGATATCCTAGCACCTGCGGAAGCAACAGCAATGTCGATCGGATTGGCCTTGCAAGGGTTACATCTGAGAGCAAGAACGAAGAAGCTTTGTTTTCCCAAGGAGGAGATTCTCACCGGTCCAGTCAAAGAGAAGCAGCTCTAACAAAGTTTCGACTGAAGCGAAAAGATAGATGTTATGAGAAAAAGGTGCGTTATGAGAGCAGGAAAAAGCTGGCAGAGCAGCGTCCAAGAGTGAAGGGACAGTTTGTCCGTAGAGTATACAATGATCCATTGCCTGCAGAAGCCAACGCCAATACATCCAACGGTTAA 2127 44.52 MGEAVMVSSEDVDLDLDLDLDYVRADIDIDIDDLAEAESMGTHKPSREGSSTGVGFGIKWERFLPKMMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSISGFALLTLIMEHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRQASSNVRTDIQEKVEVTSENETASNHSTGYVAGVQRTRNNKNIEKGSDTQSSCTKVDFEAGSKMQENSQPRQGKASPNAFELQKDERHINLSQRLVMHENEAGGLAMSCYVNADLPITLSMGLEPINDGRSPNIASEAGDNKDLLAYPSRDATVLNHACIKYPDNYQKSSPSSNAATNNFGSALHLDLSLRRCQPNDFEDCAAEGRATLKHSSASAFTRYTFRPLQTLQAKSSSICDEQKEFVSNPEHIGSIAATSTSDTINATLSLQKINTSMPLVTSQSTQSEVARSSTSETVIPPQVSVKDLMSNNPCSGYSSLLSPNFCAQRGTPSSPCPTLVTHPEPIFAKQTVYPLNLENHNLEQFLNHHHNVSNPASRKIENSGQQLESAENQGHISPTTDHSANSSLCGGNTTHVRSVGYPSTCGSNSNVDRIGLARVTSESKNEEALFSQGGDSHRSSQREAALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRRVYNDPLPAEANANTSNG 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 517743 522211 - Lag0000148.1 Lac4g0028 603560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g0028 708 Pfam CCT motif 649 691 IPR010402 GO:0005515(InterPro)
Lac4g0028 708 ProSiteProfiles Response regulatory domain profile. 70 188 IPR001789 GO:0000160(InterPro)
Lac4g0028 708 ProSiteProfiles CCT domain profile. 649 691 IPR010402 GO:0005515(InterPro)
Lac4g0028 708 SMART REC_2 69 184 IPR001789 GO:0000160(InterPro)
Lac4g0028 708 CDD psREC_PRR 71 174 - -
Lac4g0028 708 MobiDBLite consensus disorder prediction 251 266 - -
Lac4g0028 708 MobiDBLite consensus disorder prediction 251 275 - -
Lac4g0028 708 Pfam Response regulator receiver domain 71 182 IPR001789 GO:0000160(InterPro)
Lac4g0028 708 SUPERFAMILY CheY-like 63 194 IPR011006 -
Lac4g0028 708 Gene3D - 67 285 - -
Lac4g0028 708 PANTHER TWO-COMPONENT RESPONSE REGULATOR 59 258 IPR045279 GO:0009736(InterPro)
Lac4g0028 708 MobiDBLite consensus disorder prediction 560 598 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0096 Lac-Chr10:742038 Lac4g0028 Lac-Chr4:517743 1.30E-25 dispersed
Lac1g2096 Lac-Chr1:42459973 Lac4g0028 Lac-Chr4:517743 3.10E-49 dispersed
Lac4g0028 Lac-Chr4:517743 Lac7g0011 Lac-Chr7:101859 3.30E-90 dispersed
Lac4g0028 Lac-Chr4:517743 Lac3g0598 Lac-Chr3:4642751 3.00E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23670 PF00072 Response_reg 7.20E-21 CL0304 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g0028 K12130 - csv:101209788 1140.95