Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g0070 ATGGCTTCGGATCCGAAGGTTCATCTATTCGAAGAAGTGGCGAAGCACAACAAAACCAAAGATTGTTGGCTTATAATCTCTGGGAAGGTTTATGATGTAACTCCTTTCATGGACGATCATCCCGGAGGTGATGAAGTACTATTGTCTGCAACTGGGAAAGATGCCACGAACGATTTCGAAGATGTTGGGCACAGCGATTCGGCAAGAGAAATGATGGACAAGTATTACATCGGAGAAATTGATCCTTCGACAGTTCCTTTGAAGAAGATTTTCATTCCATCACAACAAACCCAGTACAACCCAGATAAGACACCTGAGTTTGTGATTAAGATCTTGCAGTTTCTGGTTCCCATATTGATTTTGGGTTTGGCATTTGCTGTTCGACACTACACCAAGAATGAATGA 405 42.22 MASDPKVHLFEEVAKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSATGKDATNDFEDVGHSDSAREMMDKYYIGEIDPSTVPLKKIFIPSQQTQYNPDKTPEFVIKILQFLVPILILGLAFAVRHYTKNE 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1259308 1261043 - Lag0000190.1 Lac4g0070 603602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g0070 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Lac4g0070 134 SMART Cyt_b5_2 8 81 IPR001199 -
Lac4g0070 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Lac4g0070 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Lac4g0070 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Lac4g0070 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Lac4g0070 134 PANTHER CYTOCHROME B5 6 132 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Lac4g0070 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Lac4g0070 134 Gene3D - 1 86 IPR036400 -
Lac4g0070 134 FunFam Cytochrome b5 type B 2 85 - -
Lac4g0070 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 80 IPR001199 -
Lac4g0070 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 87 IPR036400 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2510 Lac-Chr11:41219714 Lac4g0070 Lac-Chr4:1259308 4.30E-38 dispersed
Lac12g1295 Lac-Chr12:19369129 Lac4g0070 Lac-Chr4:1259308 1.10E-31 dispersed
Lac12g1592 Lac-Chr12:30293377 Lac4g0070 Lac-Chr4:1259308 8.90E-09 dispersed
Lac12g2057 Lac-Chr12:37681232 Lac4g0070 Lac-Chr4:1259308 1.40E-47 dispersed
Lac4g0070 Lac-Chr4:1259308 Lac7g0103 Lac-Chr7:870251 5.00E-40 dispersed
Lac4g0070 Lac-Chr4:1259308 Lac7g0465 Lac-Chr7:3688907 3.70E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g0070 K23490 - csv:101207109 272.707