Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g0157 ATGTGGCCATCATGGGACTTGAACCTATTTCTCCTAAGTCTCTTTGCTTTCCTCACTGCCCCAATGATCAAGCCAGCTCATGTTGGTGGGAATGACTCTAAGAAAACACACCTAATAATAGGTCTTTCTATTGGAGGGGCAGCTGTATTAGGCCTATGTCTAGGATGCTGTGTCTTCTATATTACGCAACGAAAGAAGAAACATGTCCTGAAGTTGAAAAGCAAAGATCTTCCTTCGCCTCCTTCAAGTGCAGGCATTCCAACTCCGACGACGTTTCTTTCTAATAGCATTCCTTCCTATCCTTATTCAAGATCCAATCTCGAGAATGGGAGCTCCTACTTTGGAGCTCAAGTCTTTACCTATGTCGAACTGGAGGAAGCAACTCATAATTTTGACCGTTCAAGGGAGCTTGGAGATGGAGGTTATGGCACTGTTTACTCGGGAACACTTAAGGATGGACGGATAGTTGCAGTAAAGCGCTTATACGAAAATAATTATAAACGCGTCGAGCAGTTCATGAATGAAGTTGAGATTTTATCCAAATTGCAACACCCGAACCTTGTAAAGCTTTATGGTTGCACATCAAGACATAGTCGGGAACTCCTCCTAGTCTATGAATACATTCCCAATGGAACAGTGGCCGACCATCTGCATGGAAAACGAGCAAATTCAGGTTTGCTCAGTTGGTCTGTTCGGCTGAAGATTGCAATAGAGACTGCTAATGCACTGGCTTACCTCCACCGCAAAGATATCATTCATCGTGATGTTAAAACCAATAACATTCTCCTTGACAACAGCTTCAAAGTAAAAGTGGCTGATTTCGGTCTGTCACGGTTATTTCCCATTGATACTACCCATGTTTCAACTGCTCCACAGGGGACACCAGGCTATGTTGATCCTGAATATTATCAATGCTACCATCTTTCTGACAAAAGTGACGTGTATAGCTTTGGAGTGGTTTTGGTTGAGCTTATATCATCACTGCAAGCAGTTGACATCAACAGGAACAGAAATGACATCAATTTGTCGAATATGGCTATTGACAGAATTCAAAATCATGCGTTACGTGATTTAGTGGATCCAGATCTTGGGTTTGAGAGGGATTATGCTGTACGATCTATGATAACATCAGTGGCAGAGTTGGCTTTTCGATGTCTTCAACAGGCAAGGGATGTGCGGCCTTCTATGGACGAAGTGCTGGAAGTTCTGAGAGAAATAGAGAATGAAGAACTGGCTGCTCGTAAAGCAGAAGTGTTGGATATAGGGTCAGATAACGTACGGCTTTTAAGGAATGCGTCATCTCTGCTTTCACCAGATTCCGGACCACTGACAGATAAATGGGTTAGAAACTCTATTATTACCTTCAACTTGAAGTTGATTCTTTTTCTTTTCTCTTTGCTTAATCTGAAATTACCATATATTTCTGTGATATAG 1434 42.05 MWPSWDLNLFLLSLFAFLTAPMIKPAHVGGNDSKKTHLIIGLSIGGAAVLGLCLGCCVFYITQRKKKHVLKLKSKDLPSPPSSAGIPTPTTFLSNSIPSYPYSRSNLENGSSYFGAQVFTYVELEEATHNFDRSRELGDGGYGTVYSGTLKDGRIVAVKRLYENNYKRVEQFMNEVEILSKLQHPNLVKLYGCTSRHSRELLLVYEYIPNGTVADHLHGKRANSGLLSWSVRLKIAIETANALAYLHRKDIIHRDVKTNNILLDNSFKVKVADFGLSRLFPIDTTHVSTAPQGTPGYVDPEYYQCYHLSDKSDVYSFGVVLVELISSLQAVDINRNRNDINLSNMAIDRIQNHALRDLVDPDLGFERDYAVRSMITSVAELAFRCLQQARDVRPSMDEVLEVLREIENEELAARKAEVLDIGSDNVRLLRNASSLLSPDSGPLTDKWVRNSIITFNLKLILFLFSLLNLKLPYISVI 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2834852 2836728 - Lag0000277.1 Lac4g0157 603689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g0157 477 ProSitePatterns Protein kinases ATP-binding region signature. 137 159 IPR017441 GO:0005524(InterPro)
Lac4g0157 477 SMART serkin_6 131 403 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g0157 477 Gene3D Transferase(Phosphotransferase) domain 1 208 420 - -
Lac4g0157 477 SUPERFAMILY Protein kinase-like (PK-like) 112 407 IPR011009 -
Lac4g0157 477 FunFam Wall-associated receptor kinase-like 20 208 416 - -
Lac4g0157 477 Gene3D Phosphorylase Kinase; domain 1 104 207 - -
Lac4g0157 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g0157 477 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 103 207 - -
Lac4g0157 477 Pfam Protein kinase domain 132 401 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g0157 477 ProSiteProfiles Protein kinase domain profile. 131 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g0157 477 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 33 451 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2500 Lac-Chr1:46415532 Lac4g0157 Lac-Chr4:2834852 9.20E-80 dispersed
Lac3g0460 Lac-Chr3:3514863 Lac4g0157 Lac-Chr4:2834852 4.80E-132 dispersed
Lac4g0157 Lac-Chr4:2834852 Lac6g0368 Lac-Chr6:3054720 2.50E-86 dispersed
Lac8g3008 Lac-Chr8:46919788 Lac4g0157 Lac-Chr4:2834852 1.50E-151 transposed
Lac12g1721 Lac-Chr12:33040793 Lac4g0157 Lac-Chr4:2834852 1.80E-31 wgd
Lac2g2648 Lac-Chr2:40772503 Lac4g0157 Lac-Chr4:2834852 3.90E-55 wgd
Lac3g1784 Lac-Chr3:18603321 Lac4g0157 Lac-Chr4:2834852 3.20E-57 wgd
Lac4g0157 Lac-Chr4:2834852 Lac7g1602 Lac-Chr7:18816416 2.20E-58 wgd
Lac4g0157 Lac-Chr4:2834852 Lac8g0305 Lac-Chr8:3607110 3.20E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86108 PF00069 Pkinase 1.70E-50 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g0157 - - - 0.0