Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac4g0165 | GTGGCAAGAGGGTTGGAGTATTTACACTGTGGTTGTAGTAAAAGGATAGTACATTTCGATATAAAACCACAAAACATTCTCTTGGATGAAGATTTCAACCCTAAAATATCCGACTTTGGCCTTGCGAAGCTTTGCAAAAGAAAAGAGAGTACAATTTCAATGTTGGGAACTAGAGGAACAGCTGGGTTCATAGCACCAGAAGTTTTTAGTCGTGCGTTTGGAGTTGTCTCGTACAAATCTGATGTGTATAGCTACGGGATGTTGGTTCTTGATCTCGTATTAGGAGGAATAAGAAATCCTAACTCGAGTTTGTTATCTGATGAAAGTGAAATGTACTTTTCAAATTGGATTTTCAAGAAATTTGAAACGAGGTTGAAAACCATTGTTCCTTTCCCCAAGAACGACGTCAACCTCCATGCCGTCGTTGAAGCTTGTCGTAGCAAAAACAAAACCATTCTTGATCCTGGCCTATGTTTACCAGCACAACAGCTATCCATAGTTCTTCCAATCCATTCTTGGAAGAATGGATATTTCTAG | 537 | 39.29 | VARGLEYLHCGCSKRIVHFDIKPQNILLDEDFNPKISDFGLAKLCKRKESTISMLGTRGTAGFIAPEVFSRAFGVVSYKSDVYSYGMLVLDLVLGGIRNPNSSLLSDESEMYFSNWIFKKFETRLKTIVPFPKNDVNLHAVVEACRSKNKTILDPGLCLPAQQLSIVLPIHSWKNGYF | 178 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2970386 | 2972289 | + | Lag0000285.1 | Lac4g0165 | 603697 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac4g0165 | 178 | Pfam | Protein kinase domain | 1 | 100 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac4g0165 | 178 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 163 | - | - | |
| Lac4g0165 | 178 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 105 | IPR011009 | - | |
| Lac4g0165 | 178 | PANTHER | RUST RESISTANCE KINASE LR10-RELATED | 1 | 124 | IPR045874 | GO:0004672(InterPro) | |
| Lac4g0165 | 178 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 16 | 28 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lac4g0165 | 178 | ProSiteProfiles | Protein kinase domain profile. | 1 | 178 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac4g0165 | 178 | FunFam | Os07g0541700 protein | 1 | 60 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac4g0165 | Lac-Chr4:2970386 | Lac4g0178 | Lac-Chr4:3127596 | 5.40E-58 | dispersed | |
| Lac4g0165 | Lac-Chr4:2970386 | Lac4g0168 | Lac-Chr4:3016273 | 9.20E-66 | proximal |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 86109 | PF00069 | Pkinase | 7.00E-24 | CL0016 | Lac | PK |
Pathway information