Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g0168 ATGAATATAGAATCCATGATGAATTATGGACCAAAACGATACCATTACTCAGAGATAAAGAAGATCACCAACTCTTTTTCAGACAAAGTAGGTGAAGGTGGATATGGCATTGTCTATCGAGGTAAACTAGCTGATGGTACTCTCGTAGCTATAAAAGTTCTAAAGGTGTCAAAAGGTGATGGTGAAGATTTCATAAATGAAGTTACAAGTATTAGCAGAACATCGCATGTTAATATAGTTAGTCTTTTAGGATTTTCTTACAATACAAAGAAAATAACTCTAGTGTATGAGTTTATGGCTAATGGATCACTTGATAAGTTCATGTCTAGAAGTCACAATTTGGAGATGAAAATGCTTCATAGAATCATCATAGGTGTGGCAAGAGGCTTAGAGTATTTACACTGTGGGTGTAGTACAAGGATAGTGCATTTCGATATAAAACCACAAAACATTCTCTTGGATGAAGATTTCAACCCTAAAATATCTGACTTTGGCCTTGCAAAGCTTTGTAAAAGAAAAGAGAGTGCAATTTCAATGTTGGGAACTAGAGGAACAGCCGGGTTCATAGCGCCCGAAGTTTTTAGTCGTGCGTTTGGAGTTGTCTCGTACAAATCAGATGTGTATAGCTATGGGATGTTGGTTCTTGATCTCGTATTAGGAGGAATAAGAAATCCTAACTCGAGTTTGTTATCTGATGAAAGTGAACTGTACTTTCCAAATTGGGTTTTCAAGAAATTTGAAACGGATAAGACAACAAGAATGGATCAAAATTTGTTGGAAGAAGACGAAGAAATGGAGCGAAAAATGGTTATGATAGGTTTGTGGTGCATTCAAACGTCTCCATTAGATAGGCCTTCAATGAGTAGAGTATTGGAGATGTTGGAGGGAAGTATTCACTCCCTGCAAATGCCTCCGAGACCTTCATTGGTTCCCCATAATAGATCAATCCAACAATCTACCTCTGAATCAATATCACATGAGACTATTTAA 990 36.97 MNIESMMNYGPKRYHYSEIKKITNSFSDKVGEGGYGIVYRGKLADGTLVAIKVLKVSKGDGEDFINEVTSISRTSHVNIVSLLGFSYNTKKITLVYEFMANGSLDKFMSRSHNLEMKMLHRIIIGVARGLEYLHCGCSTRIVHFDIKPQNILLDEDFNPKISDFGLAKLCKRKESAISMLGTRGTAGFIAPEVFSRAFGVVSYKSDVYSYGMLVLDLVLGGIRNPNSSLLSDESELYFPNWVFKKFETDKTTRMDQNLLEEDEEMERKMVMIGLWCIQTSPLDRPSMSRVLEMLEGSIHSLQMPPRPSLVPHNRSIQQSTSESISHETI 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3016273 3017262 + Lag0000288.1 Lac4g0168 603700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g0168 329 ProSiteProfiles Protein kinase domain profile. 24 302 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g0168 329 Gene3D Transferase(Phosphotransferase) domain 1 99 304 - -
Lac4g0168 329 PIRSF ILK 3 304 - -
Lac4g0168 329 SUPERFAMILY Protein kinase-like (PK-like) 6 295 IPR011009 -
Lac4g0168 329 FunFam PR5-like receptor kinase 99 306 - -
Lac4g0168 329 MobiDBLite consensus disorder prediction 302 329 - -
Lac4g0168 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g0168 329 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 315 IPR045874 GO:0004672(InterPro)
Lac4g0168 329 Pfam Protein kinase domain 27 292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g0168 329 ProSitePatterns Protein kinases ATP-binding region signature. 30 52 IPR017441 GO:0005524(InterPro)
Lac4g0168 329 SMART serkin_6 24 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g0168 329 MobiDBLite consensus disorder prediction 311 329 - -
Lac4g0168 329 Gene3D Phosphorylase Kinase; domain 1 2 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0258 Lac-Chr10:1975291 Lac4g0168 Lac-Chr4:3016273 1.30E-53 dispersed
Lac10g0259 Lac-Chr10:1976349 Lac4g0168 Lac-Chr4:3016273 7.60E-90 dispersed
Lac4g0168 Lac-Chr4:3016273 Lac4g0178 Lac-Chr4:3127596 1.90E-149 dispersed
Lac4g0165 Lac-Chr4:2970386 Lac4g0168 Lac-Chr4:3016273 9.20E-66 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86110 PF00069 Pkinase 2.30E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g0168 - - - 0.0