Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g0178 ATGCTGACTATGGAATCAGTAATCAATTCCAAACCGAAGCGATATCATTATTCAGAGATCAAGAAAATGACCAACTCATTTTCAGAAAAACTAGGAGAAGGGGGATACGGTGTTGTCTATCGAGGTAAACTAGATAATGGTACCCTCTTAGCTATAAAAGTTCTAAAGGTGTCGAAAAGTGATGGTGAAGATTTCATAAATGAAGTGATGAGTATTAGCAAAACTTCACATGTTAATATAGTTAGTCTTTTAGGAATTTCTTACAACTCAAAGGAAGTAGCGCTTGTGTATGAATTTATGTGTAATGGTTCACTTGAGAGCTTCGTCTCTAGAACTCAAAACCTCGAGATGAAAATCGTTCATAGAATCGTTGTAGGTGTGGCAAAAGGATTAGAATATCTACATTGTGGTTGTAGTACAAGGATAGTCCATTTCGACATAAAGCCTCAAAACATTCTATTGGACGAAGATTTCAATCCTAAAATATCTGACTTTGGCCTTGCAAAGCTTTGCAAAAGAAAGGATAGTGCGATTTCAATGTTAGGTGCAAGAGGAACAGTTGGATTCATGGCACCAGAAGTTTATAGTCGTGCATTTGGAATTGTCTCATACAAATCTGATGTGTATAGCTATGGAATGCTAGTTCTCGATCTTGTATTGGGAGGAAGAAGAAACGTTAGTTCAAAATTTTTATCTGATGATAGTGAAATGTACTTTCCAAATTGGGTTCTTAAAAATTTTGAAGCAGGTAAAACTTTAAGAACTAATCAGAATTTGACAGAGGAGGAAGAAGAAATGGAGAAGAAAATGGTTATAGTAGGCTTGTGGTGCATTCAAACATCTCCACTTGATAGGCCTTCAATGACTAAGGTATTGGAGATGTTAGATGGAAGCAGTCACTCTTTGCAAATGCCTCCAAGATCTTCATTGGTTCTCCCTGCTGAAATGTCAACTCAACAATCTGTCTCTCAATCATCATCATAA 984 36.48 MLTMESVINSKPKRYHYSEIKKMTNSFSEKLGEGGYGVVYRGKLDNGTLLAIKVLKVSKSDGEDFINEVMSISKTSHVNIVSLLGISYNSKEVALVYEFMCNGSLESFVSRTQNLEMKIVHRIVVGVAKGLEYLHCGCSTRIVHFDIKPQNILLDEDFNPKISDFGLAKLCKRKDSAISMLGARGTVGFMAPEVYSRAFGIVSYKSDVYSYGMLVLDLVLGGRRNVSSKFLSDDSEMYFPNWVLKNFEAGKTLRTNQNLTEEEEEMEKKMVIVGLWCIQTSPLDRPSMTKVLEMLDGSSHSLQMPPRSSLVLPAEMSTQQSVSQSSS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3127596 3128579 - Lag0000298.1 Lac4g0178 603710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g0178 327 Gene3D Phosphorylase Kinase; domain 1 3 99 - -
Lac4g0178 327 Pfam Protein kinase domain 28 293 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g0178 327 PANTHER RUST RESISTANCE KINASE LR10-RELATED 7 317 IPR045874 GO:0004672(InterPro)
Lac4g0178 327 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g0178 327 Coils Coil 249 269 - -
Lac4g0178 327 Gene3D Transferase(Phosphotransferase) domain 1 100 305 - -
Lac4g0178 327 ProSiteProfiles Protein kinase domain profile. 25 303 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g0178 327 PIRSF ILK 3 307 - -
Lac4g0178 327 SUPERFAMILY Protein kinase-like (PK-like) 8 295 IPR011009 -
Lac4g0178 327 SMART serkin_6 25 295 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g0178 327 FunFam PR5-like receptor kinase 100 307 - -
Lac4g0178 327 ProSitePatterns Protein kinases ATP-binding region signature. 31 53 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g0165 Lac-Chr4:2970386 Lac4g0178 Lac-Chr4:3127596 5.40E-58 dispersed
Lac4g0168 Lac-Chr4:3016273 Lac4g0178 Lac-Chr4:3127596 1.90E-149 dispersed
Lac4g0178 Lac-Chr4:3127596 Lac8g2216 Lac-Chr8:40502036 2.00E-58 dispersed
Lac2g2648 Lac-Chr2:40772503 Lac4g0178 Lac-Chr4:3127596 5.40E-48 wgd
Lac4g0178 Lac-Chr4:3127596 Lac4g1255 Lac-Chr4:30380030 4.70E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86111 PF00069 Pkinase 2.70E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g0178 - - - 0.0