Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g0252 ATGCCTGCAGAGAGACATGATGAGAGACATAAGATGATTACAAATTCAAAAGAAGAGAATTCACCTCCAAAACTAGCAGCAGCTTCATCAAGCGCATCCGCGGCGACGCCATGGCTTAGGCTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGAGACAGGCGCGTAAGGCTTTCGGTTTCGACCGCAATTCAGCTCTATGATCTTCAAGACCGCCTCGGCCTCAACCAGCCGAGCAAGGTTGTCGACTGGTTGCTCAACGCGGCCAAGGACGAAATCGACGAACTCCCTCCATTGCCAATCCCATCCGCAAGCCTCGGCCTTAACTACCAATCCATGCTACTACCTCACACGCAGACACACCCGCATAGGCCAGAGTTCAAAATCAACAACTGCAATGGCATCGGCATCGGCATCGGGAACAAGGAAGCCGAGGACGACGCCAGCGCTCCGGAACAAAAGCAACAGAAATCGAATTCTAATCCGGGTCACCCTTGTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTACCATTGGGAGGCATCATCAACAAATAATGTTCCATTCTTTACTACATCTCAAGCTGAGGATCTTCATAACTTCAATAATGTCAATTTGTCTTTGCCTTCCCCTTTGTCCCTCTCAACTGGCTCTCAGTTTTTGGAGTTCAATCACAGCTTGCACCAAAATTTCTTGATTCAACATCCTCCTAATTTGCACTCTATAAACCAACCAACAACTGTTAGGCCTTTCCATTTCAATATGGCTCCCAAATTCATTTCTCAACAGAAGAATAACAATGGAGATCATCATCCACCAAATAAGAATGATATTGGCTTTGGCTCTGATGAATGA 921 47.77 MPAERHDERHKMITNSKEENSPPKLAAASSSASAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLNYQSMLLPHTQTHPHRPEFKINNCNGIGIGIGNKEAEDDASAPEQKQQKSNSNPGHPCSFSALLNNVSAPPFGYHWEASSTNNVPFFTTSQAEDLHNFNNVNLSLPSPLSLSTGSQFLEFNHSLHQNFLIQHPPNLHSINQPTTVRPFHFNMAPKFISQQKNNNGDHHPPNKNDIGFGSDE 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5239809 5241337 - Lag0000372.1 Lac4g0252 603784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g0252 306 MobiDBLite consensus disorder prediction 1 31 - -
Lac4g0252 306 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 262 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Lac4g0252 306 MobiDBLite consensus disorder prediction 283 306 - -
Lac4g0252 306 MobiDBLite consensus disorder prediction 1 17 - -
Lac4g0252 306 ProSiteProfiles TCP domain profile. 55 113 IPR017887 -
Lac4g0252 306 Pfam TCP family transcription factor 55 158 IPR017887 -
Lac4g0252 306 MobiDBLite consensus disorder prediction 157 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g0252 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0172 Lac-Chr10:1303891 Lac4g0252 Lac-Chr4:5239809 2.10E-29 dispersed
Lac10g1094 Lac-Chr10:8995686 Lac4g0252 Lac-Chr4:5239809 6.00E-24 dispersed
Lac1g3533 Lac-Chr1:54573206 Lac4g0252 Lac-Chr4:5239809 3.40E-24 dispersed
Lac4g0252 Lac-Chr4:5239809 Lac5g2433 Lac-Chr5:42955226 1.70E-19 dispersed
Lac4g0252 Lac-Chr4:5239809 Lac3g0555 Lac-Chr3:4239489 1.90E-31 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g2023 . 40 264 TCP Transcription Factor Family AT5G23280 62.5 3.8e-65 245.7
Lac13g0918 . 36 260 TCP Transcription Factor Family AT5G23280 58.5 6.9e-59 224.9
Lac10g2715 . 40 210 TCP Transcription Factor Family AT5G23280 65.5 3.1e-51 199.5
Lac8g2693 . 40 210 TCP Transcription Factor Family AT5G23280 66.1 9.0e-51 198.0
Lac12g1849 . 53 342 TCP Transcription Factor Family AT2G45680 54.1 3.2e-70 263.1
Lac13g0309 . 67 167 TCP Transcription Factor Family AT3G47620 88.3 2.3e-42 171.0
Lac13g0026 . 155 237 TCP Transcription Factor Family AT3G47620 90.4 1.9e-36 151.4
Lac10g0060 . 59 160 TCP Transcription Factor Family AT3G47620 72.5 4.2e-36 150.2
Lac8g0084 . 1 313 TCP Transcription Factor Family AT3G27010 56.9 5.4e-61 232.3
Lac4g2142 . 26 251 TCP Transcription Factor Family AT3G27010 53.7 9.9e-55 211.5
Lac8g2023 . 1 263 TCP Transcription Factor Family AT5G08330 58.4 3.8e-67 252.3
Lac13g0918 . 8 258 TCP Transcription Factor Family AT5G08330 54.8 3.5e-60 229.2
Lac10g2715 . 1 214 TCP Transcription Factor Family AT5G08330 56.4 1.2e-52 204.1
Lac8g2693 . 1 214 TCP Transcription Factor Family AT5G08330 58.9 4.6e-52 202.2
Lac4g0252 . 33 149 TCP Transcription Factor Family AT3G02150 66.1 2.8e-37 153.7
Lac12g0797 . 6 168 TCP Transcription Factor Family AT2G31070 53.6 5.1e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23673 PF03634 TCP 1.10E-27 No_clan Lac TF