Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac4g0252 | ATGCCTGCAGAGAGACATGATGAGAGACATAAGATGATTACAAATTCAAAAGAAGAGAATTCACCTCCAAAACTAGCAGCAGCTTCATCAAGCGCATCCGCGGCGACGCCATGGCTTAGGCTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGAGACAGGCGCGTAAGGCTTTCGGTTTCGACCGCAATTCAGCTCTATGATCTTCAAGACCGCCTCGGCCTCAACCAGCCGAGCAAGGTTGTCGACTGGTTGCTCAACGCGGCCAAGGACGAAATCGACGAACTCCCTCCATTGCCAATCCCATCCGCAAGCCTCGGCCTTAACTACCAATCCATGCTACTACCTCACACGCAGACACACCCGCATAGGCCAGAGTTCAAAATCAACAACTGCAATGGCATCGGCATCGGCATCGGGAACAAGGAAGCCGAGGACGACGCCAGCGCTCCGGAACAAAAGCAACAGAAATCGAATTCTAATCCGGGTCACCCTTGTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTACCATTGGGAGGCATCATCAACAAATAATGTTCCATTCTTTACTACATCTCAAGCTGAGGATCTTCATAACTTCAATAATGTCAATTTGTCTTTGCCTTCCCCTTTGTCCCTCTCAACTGGCTCTCAGTTTTTGGAGTTCAATCACAGCTTGCACCAAAATTTCTTGATTCAACATCCTCCTAATTTGCACTCTATAAACCAACCAACAACTGTTAGGCCTTTCCATTTCAATATGGCTCCCAAATTCATTTCTCAACAGAAGAATAACAATGGAGATCATCATCCACCAAATAAGAATGATATTGGCTTTGGCTCTGATGAATGA | 921 | 47.77 | MPAERHDERHKMITNSKEENSPPKLAAASSSASAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLNYQSMLLPHTQTHPHRPEFKINNCNGIGIGIGNKEAEDDASAPEQKQQKSNSNPGHPCSFSALLNNVSAPPFGYHWEASSTNNVPFFTTSQAEDLHNFNNVNLSLPSPLSLSTGSQFLEFNHSLHQNFLIQHPPNLHSINQPTTVRPFHFNMAPKFISQQKNNNGDHHPPNKNDIGFGSDE | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 5239809 | 5241337 | - | Lag0000372.1 | Lac4g0252 | 603784 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac4g0252 | 306 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Lac4g0252 | 306 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 20 | 262 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER) | |
| Lac4g0252 | 306 | MobiDBLite | consensus disorder prediction | 283 | 306 | - | - | |
| Lac4g0252 | 306 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Lac4g0252 | 306 | ProSiteProfiles | TCP domain profile. | 55 | 113 | IPR017887 | - | |
| Lac4g0252 | 306 | Pfam | TCP family transcription factor | 55 | 158 | IPR017887 | - | |
| Lac4g0252 | 306 | MobiDBLite | consensus disorder prediction | 157 | 183 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g0172 | Lac-Chr10:1303891 | Lac4g0252 | Lac-Chr4:5239809 | 2.10E-29 | dispersed | |
| Lac10g1094 | Lac-Chr10:8995686 | Lac4g0252 | Lac-Chr4:5239809 | 6.00E-24 | dispersed | |
| Lac1g3533 | Lac-Chr1:54573206 | Lac4g0252 | Lac-Chr4:5239809 | 3.40E-24 | dispersed | |
| Lac4g0252 | Lac-Chr4:5239809 | Lac5g2433 | Lac-Chr5:42955226 | 1.70E-19 | dispersed | |
| Lac4g0252 | Lac-Chr4:5239809 | Lac3g0555 | Lac-Chr3:4239489 | 1.90E-31 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23673 | PF03634 | TCP | 1.10E-27 | No_clan | Lac | TF |
Pathway information