Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g0252 ATGCCTGCAGAGAGACATGATGAGAGACATAAGATGATTACAAATTCAAAAGAAGAGAATTCACCTCCAAAACTAGCAGCAGCTTCATCAAGCGCATCCGCGGCGACGCCATGGCTTAGGCTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGAGACAGGCGCGTAAGGCTTTCGGTTTCGACCGCAATTCAGCTCTATGATCTTCAAGACCGCCTCGGCCTCAACCAGCCGAGCAAGGTTGTCGACTGGTTGCTCAACGCGGCCAAGGACGAAATCGACGAACTCCCTCCATTGCCAATCCCATCCGCAAGCCTCGGCCTTAACTACCAATCCATGCTACTACCTCACACGCAGACACACCCGCATAGGCCAGAGTTCAAAATCAACAACTGCAATGGCATCGGCATCGGCATCGGGAACAAGGAAGCCGAGGACGACGCCAGCGCTCCGGAACAAAAGCAACAGAAATCGAATTCTAATCCGGGTCACCCTTGTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTACCATTGGGAGGCATCATCAACAAATAATGTTCCATTCTTTACTACATCTCAAGCTGAGGATCTTCATAACTTCAATAATGTCAATTTGTCTTTGCCTTCCCCTTTGTCCCTCTCAACTGGCTCTCAGTTTTTGGAGTTCAATCACAGCTTGCACCAAAATTTCTTGATTCAACATCCTCCTAATTTGCACTCTATAAACCAACCAACAACTGTTAGGCCTTTCCATTTCAATATGGCTCCCAAATTCATTTCTCAACAGAAGAATAACAATGGAGATCATCATCCACCAAATAAGAATGATATTGGCTTTGGCTCTGATGAATGA 921 47.77 MPAERHDERHKMITNSKEENSPPKLAAASSSASAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLNYQSMLLPHTQTHPHRPEFKINNCNGIGIGIGNKEAEDDASAPEQKQQKSNSNPGHPCSFSALLNNVSAPPFGYHWEASSTNNVPFFTTSQAEDLHNFNNVNLSLPSPLSLSTGSQFLEFNHSLHQNFLIQHPPNLHSINQPTTVRPFHFNMAPKFISQQKNNNGDHHPPNKNDIGFGSDE 306
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 5239809 5241337 - Lag0000372.1 Lac4g0252 603784
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac4g0252 306 MobiDBLite consensus disorder prediction 1 31 - -
Lac4g0252 306 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 262 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Lac4g0252 306 MobiDBLite consensus disorder prediction 283 306 - -
Lac4g0252 306 MobiDBLite consensus disorder prediction 1 17 - -
Lac4g0252 306 ProSiteProfiles TCP domain profile. 55 113 IPR017887 -
Lac4g0252 306 Pfam TCP family transcription factor 55 158 IPR017887 -
Lac4g0252 306 MobiDBLite consensus disorder prediction 157 183 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0172 Lac-Chr10:1303891 Lac4g0252 Lac-Chr4:5239809 2.10E-29 dispersed
Lac10g1094 Lac-Chr10:8995686 Lac4g0252 Lac-Chr4:5239809 6.00E-24 dispersed
Lac1g3533 Lac-Chr1:54573206 Lac4g0252 Lac-Chr4:5239809 3.40E-24 dispersed
Lac4g0252 Lac-Chr4:5239809 Lac5g2433 Lac-Chr5:42955226 1.70E-19 dispersed
Lac4g0252 Lac-Chr4:5239809 Lac3g0555 Lac-Chr3:4239489 1.90E-31 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23673 PF03634 TCP 1.10E-27 No_clan Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g0252 - - - 0.0