Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g0341 ATGAGGTTGTTCGTTTCAGCTGTCTTCCTTTTTGTCATGTTTTCTCATGGAGCTGCATACGATCCATTGGATCCAAATGGAAACATTACGATCAAATGGGACGTCATGTCATGGACACCCGACGGCTATGTGGCAGTTGTGACGTTGAACAACTTCCAAATGTACCGACACATAATGAGCCCTAGGTGGACGATGGGGTGGACGTGGGCGAAAAAGGAAGTGATATGGTCAATGGTGGGGTCGCAGACGACCGAGCAAGGCGACTGCTCCAAGTTCAAAGGAAACATTCCTCATTGTTGTAAGAAAAACCCCACTGTTGTGGATTTGATGCCTGGAGTTCCTTACAACCAACAGTTTACAAACTGCTGCAAAGGTGGGGTTGTGGCTGCTTGGGGACAAGACCCTCAAGCTGCTGTTTCGGCCTTTCAGATCAGTGTTGGCCAAGCAGGTACTTCAAACAAGACTGTCAAACTCCCCAAGAATTTCACTCTGATCGGTCCTAGCCCCGGATACACTTGTGGCCCTGCAAAGGTTGTGCCTTCCACCACCTTCCTCACGCCCGACCGTCGTCGGAAAACTCAAGCTCTGATGACTTGGAATGTGACCTGCACTTACTCTCAATTTCTGGCCAGAAAGAACCCTAATTGTTGCGTTTCTTTCTCGTCTTTCTACAATGATACAATCACATCTTGTCCTTCTTGTGCCTGTGGTTGCCAAAATAAGAACAGCTGTGTTAAGGGTGATTCTAAGATTCTGAAGATGGTTGGAATCAATACACCAAGGAAAGACAATGCCCCGTTGCTGCAGTGCACACATCATATGTGCCCAGTTCGAGTTCACTGGCACGTGAAGCAAAATTACAAAGAATATTGGCGGGTGAAGATCGCCATCACAAACTTCAACTACCGAATGAACTATTCGCTTTGGTCTCTCGTCGTCCAGCACCCGAATCTGAACAATGTAACCCAAGTTTTCAGCTTCGACTACAAACCCCTTGTTCCCTATGAATCAATCAATGACACAGGAATGTTTTACGGGATGAAGTTTTACAACGACCTTCTGATGGAAGCAGGGCCATTCGGGAATGTACAGTCAGAGGTGTTGCTGCAAAAGGACCAGAACACCTTCACCTTCAAGCAGGGATGGGCATTTCCTCGGAAAGTTTACTTCAACGGCGATGAGTGCATGCTTCCGCCACCCGACACATACCCATTCCTGCCGAACGCCGCCCGCCAAAGGCCCCCCATTGTCCTCTTAACTTCAATTGCTTTGCCGCTGCTCTTCCTGCTGCTAGCTATTTGA 1302 48.08 MRLFVSAVFLFVMFSHGAAYDPLDPNGNITIKWDVMSWTPDGYVAVVTLNNFQMYRHIMSPRWTMGWTWAKKEVIWSMVGSQTTEQGDCSKFKGNIPHCCKKNPTVVDLMPGVPYNQQFTNCCKGGVVAAWGQDPQAAVSAFQISVGQAGTSNKTVKLPKNFTLIGPSPGYTCGPAKVVPSTTFLTPDRRRKTQALMTWNVTCTYSQFLARKNPNCCVSFSSFYNDTITSCPSCACGCQNKNSCVKGDSKILKMVGINTPRKDNAPLLQCTHHMCPVRVHWHVKQNYKEYWRVKIAITNFNYRMNYSLWSLVVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLQKDQNTFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNAARQRPPIVLLTSIALPLLFLLLAI 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7891089 7892842 + Lag0000461.1 Lac4g0341 603873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g0341 433 PIRSF COBRA 1 433 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lac4g0341 433 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lac4g0341 433 PANTHER PROTEIN COBRA 5 424 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0179 Lac-Chr10:1366290 Lac4g0341 Lac-Chr4:7891089 9.10E-173 dispersed
Lac3g0547 Lac-Chr3:4181393 Lac4g0341 Lac-Chr4:7891089 1.20E-219 dispersed
Lac4g0341 Lac-Chr4:7891089 Lac8g2760 Lac-Chr8:44907949 5.70E-170 dispersed
Lac4g0341 Lac-Chr4:7891089 Lac4g0343 Lac-Chr4:7894194 2.90E-89 proximal
Lac4g0341 Lac-Chr4:7891089 Lac4g0342 Lac-Chr4:7893385 9.80E-29 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g0341 - - - 0.0