Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g0364 ATGGGAAGAGGAAGAGTGGAATTGAAGAGAATAGAGAACAAGATAAACAGGCAAGTGACATTTGCAAAGAGAAGAAATGGACTGTTGAAGAAAGCTTATGAGCTTTCTGTGCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAATCGTGGCAAGCTCTATGAGTTCTGTAGTACTTCCAACATGCTCAAAACACTTGAAAGGTACCAAAAATGCAGTTATGGAGCGGTGGAGGTCACGAAACCAGCCAAAGAGCTCGAGAGTAGCTATAGAGAATATTTGAAGCTGAAGGCTAGGTTTGAGTCACTACAAAGAACTCAGAGGTGA 330 41.82 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKARFESLQRTQR 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8508175 8509334 + Lag0000484.1 Lac4g0364 603896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g0364 109 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0364 109 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0364 109 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0364 109 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0364 109 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0364 109 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0364 109 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0364 109 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0364 109 FunFam MADS-box transcription factor 1 13 88 - -
Lac4g0364 109 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 109 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac4g0364 109 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac4g0364 109 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g0364 Lac-Chr4:8508175 Lac4g1844 Lac-Chr4:37649297 1.30E-43 dispersed
Lac2g2405 Lac-Chr2:34446982 Lac4g0364 Lac-Chr4:8508175 2.00E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23674 PF00319 SRF-TF 6.10E-27 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g0364 K09264 - csv:101208204 214.542