Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g0374 ATGGGAAGAGGGAGAGTTCAGCTCAAGAGAATAGAGAACAAAATCAGCCGCCAAGTCACCTTCTCTAAGCGCAGAGCTGGTTTGCTCAAAAAGGCCCATGAGATCTCTGTCCTTTGCGATGCTGATGTTGCTTTGATCGTCTTCTCCACCAAGGGAAAGCTCTTTGAGTACTCCACTGAATCCAGCATGGAGAAGATCTTAGAAAAATATGAGAGATATTCTTATGCAGAGAAACCATTGGCTCCAAATGGAGATTCTGAATTACAGGTAAGTTGGAGTCAGGAGTATCCAAAACTTGCAGCCAGACTGGAGATTGTACAGAAGAACATAAGGCATTATTTGGGAGAAGATCTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGATTCATCACTCAAGCGCATAAGAGCTAGAAAGAACCAACTGATGCAAGAATCCATTTCAAAGCTACACAAGAAGGAAAGGGAATTGCAAGAGGAGAACAGGCAGCTAGCAAATAAGGTAAAGGAGAATGAGAAAGTTTTGGTCGAACGTAGGCACTGCGAGCTCCCAAACTTGGTTCAAAGTCAGTCCTTTTTTGCAGTGTCACCATCGATTCCTTCTTTATCTATTGGGGGCTTTAGACACATTGGTTTACTAATAGGAGGTAATGAGCAACAATCTTTTGAGCTAGTTTTTGGAAGGATGAGCTCTGTGTAG 714 42.58 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSTESSMEKILEKYERYSYAEKPLAPNGDSELQVSWSQEYPKLAARLEIVQKNIRHYLGEDLDPLNLRELQSLEQQLDSSLKRIRARKNQLMQESISKLHKKERELQEENRQLANKVKENEKVLVERRHCELPNLVQSQSFFAVSPSIPSLSIGGFRHIGLLIGGNEQQSFELVFGRMSSV 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8933038 8937882 + Lag0000494.1 Lac4g0374 603906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g0374 237 Gene3D - 13 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0374 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0374 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0374 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0374 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 192 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac4g0374 237 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Lac4g0374 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0374 237 Pfam K-box region 89 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac4g0374 237 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac4g0374 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0374 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0374 237 Coils Coil 123 182 - -
Lac4g0374 237 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac4g0374 237 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g0374 237 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g0374 Lac-Chr4:8933038 Lac6g0810 Lac-Chr6:6986829 5.00E-59 dispersed
Lac1g3653 Lac-Chr1:55652290 Lac4g0374 Lac-Chr4:8933038 2.10E-33 transposed
Lac4g0374 Lac-Chr4:8933038 Lac9g0199 Lac-Chr9:3086635 1.30E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23675 PF01486 K-box 1.50E-28 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g0374 K09264 - csv:101218674 346.665