Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g0414 ATGCACAATGAATTTGAGATGAGTATGATGGGAGAACTTAGCTTCTTCCTTGGACTTCAAATCAAAAAACTCAAGGATGGTATTTTCATAAGTCAAGAGAAACACACAAGGGATTTGCTCAAAGGGTTCAAATTCAATGAAGGTAAAATTGCAAAAACTCCTATGAGCACATCCAGTAAGCTTGACAAGGATGAAAAAGGTTTATGGTATCCTAGAAATGTTGAATTTAATTTGGTAGGATATTCCGACGCGGATTTTGCAGCCGTCAAAACTGTCTCCCTTCTTCAACCTTCGGGTGCGAAAGGTTCAACCCCCATTCTTGAATCTTTCTGGGTTGTTCTTAATCAAAAGAAAAAATCGTTCATTTTCTTCTTCGTAATTTTATTTTGCTTCTATGGAGGAGGTTCTGGTCGAGTCGGCCATAGGGGATTTAATTGGAGAAACAGAGTTGTCCGTTGGCGAGTTATTGTTGACAAATATCGGGCACAAATCGTGTCGAAGGCTTCTACATTTGTCGCAAAGGCTCTCGAGGAAGACAAGGAAAAACTCGAGATCCTCCTCTCCACAGCTCAAGGGGAGGTCATGTTGTTGTCGGATCAAATCGGTTATCTTGTGGAGGAGGAAGAAATAGAGAAACATGCTGGAGAGAAAGGGAAAGGGAAACCACCGACTAGCAATTCCTCTGTGAAGGTCAAACAACTTCATGATTGGTTGGCACATTGGAATGAAAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGTAAAAAGCTCAACGATTCTGGTGCCAAAAAAGTTGTCTCGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAATTGGTTAGCAAGATGCTTGGTTATGAGGCTATAAAGGTAAATGCCAGCTATAATCGGGTTAAGTTGAATTATAGGCCAAAACATCCCAAAACTGTGTTGATTATGGACGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGTGAGCATTAAAATCTCCAAAATTCCAATTATTTGCATATGTAATGACCGTGACTTTGTTCCTCTTTTTGGTTACCGAAGAAGGTCCTACTTAATTTTATCAAGGCTCGTTGGTGCGTTCTCATTGAGCTTTATGGCTACCATTGTTAATAGCAAGTATGGTACTGCTACGTGTATACTTCTCGGGTCTCTTTCTGTGGCGTTTTCTGATGTTGATTCAGACTCTAACACTGAGGAACTTGAATTGTTAGATCCATCACCAGCTAATACAGTGGTCGGCAAAATTTTTGTGTCATGTTTTGTCGAGCGTCGCGACGCTATAGGGGTAGCGTCGCGACGCTACTGCCTGCCGCAGATTCTGGAATTGGAAAATTACAAGCGTCGAGACGCTATGGTCACAGCATCGAGACGCTGTGACCTGTTCGCGCCAATTTCAAAGATGGAATGCCAGCGTCGAGAAGCCCAAAGAGCAGCGTCTCGATGCTGGTCTGCGGATGAGCCCCTTTCTCAATCTTCCAACTTGAATCTCTTTCGTTCCTTTGGCTTCTTTTCGCATCCCGAACATCCATTTGACTCCAATTTCTCAATTATGACTTGGCAATAA 1605 42.68 MHNEFEMSMMGELSFFLGLQIKKLKDGIFISQEKHTRDLLKGFKFNEGKIAKTPMSTSSKLDKDEKGLWYPRNVEFNLVGYSDADFAAVKTVSLLQPSGAKGSTPILESFWVVLNQKKKSFIFFFVILFCFYGGGSGRVGHRGFNWRNRVVRWRVIVDKYRAQIVSKASTFVAKALEEDKEKLEILLSTAQGEVMLLSDQIGYLVEEEEIEKHAGEKGKGKPPTSNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSAKLVSKMLGYEAIKVNASYNRVKLNYRPKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISKIPIICICNDRDFVPLFGYRRRSYLILSRLVGAFSLSFMATIVNSKYGTATCILLGSLSVAFSDVDSDSNTEELELLDPSPANTVVGKIFVSCFVERRDAIGVASRRYCLPQILELENYKRRDAMVTASRRCDLFAPISKMECQRREAQRAASRCWSADEPLSQSSNLNLFRSFGFFSHPEHPFDSNFSIMTWQ 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9564377 9571512 - Lag0000534.1 Lac4g0414 603946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g0414 534 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 227 354 - GO:0003677(PANTHER)|GO:0005634(PANTHER)
Lac4g0414 534 CDD AAA 268 334 - -
Lac4g0414 534 Coils Coil 173 193 - -
Lac4g0414 534 Pfam BT1 family 352 421 IPR039309 -
Lac4g0414 534 SMART AAA_5 262 367 IPR003593 GO:0016887(InterPro)
Lac4g0414 534 Gene3D - 224 364 IPR027417 -
Lac4g0414 534 Pfam ATPase family associated with various cellular activities (AAA) 267 337 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac4g0414 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 355 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1360 Lac-Chr12:21963716 Lac4g0414 Lac-Chr4:9564377 2.20E-38 dispersed
Lac1g1062 Lac-Chr1:27587512 Lac4g0414 Lac-Chr4:9564377 7.20E-70 dispersed
Lac4g0414 Lac-Chr4:9564377 Lac9g2747 Lac-Chr9:45641661 9.80E-55 dispersed
Lac12g0279 Lac-Chr12:3062008 Lac4g0414 Lac-Chr4:9564377 2.70E-06 transposed
Lac3g2882 Lac-Chr3:46070464 Lac4g0414 Lac-Chr4:9564377 5.30E-65 transposed
Lac8g0361 Lac-Chr8:4415381 Lac4g0414 Lac-Chr4:9564377 1.20E-10 transposed
Lac8g0594 Lac-Chr8:9220758 Lac4g0414 Lac-Chr4:9564377 2.40E-10 transposed
Lac8g1360 Lac-Chr8:29799063 Lac4g0414 Lac-Chr4:9564377 6.10E-26 transposed
Lac9g2867 Lac-Chr9:46630790 Lac4g0414 Lac-Chr4:9564377 1.60E-26 transposed
Lac3g2239 Lac-Chr3:29820893 Lac4g0414 Lac-Chr4:9564377 7.80E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g0414 K10754 - csv:101204361 178.718