Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g0561 ATGAAGGGTTTGGGGTGTTGTTTGTTCGTCTCTCTTCTTCTTCTATCTTCCTTTACATTTTTCTCTTCGGCCCTTTCCAATGCCGAAGCTTCTTTAATTGCCCGCCGCCAACTTTTAACCCTTCATGAGAACGATGATTTGCCTGACGATTACGAATCTACAATCCAGGTCAAAGAAACCTTCTCCAGTCCTCGTCTCCGACGAGCTTTCATCGCCCTTCAAGCCTGGAAGAAGGCCATTTATTCCGACCCTTCTAACGTCACCGCCAATTGGGTCGGCGCCGATGTCTGTTCCTACACCGGAGTTTTCTGCGCCCCTGCTCTCGACGACAAGAAAATCGAAGTCGTCGCCGGAATCGACCTCAACCACGCCGACATCGCCGGTTACCTGCCCGTCGAGCTCGGTTTACTAACCGACATCGCGTTGTTTCACATCAACACCAATCGATTTTGTGGCATTGTCCCCTCGAGCTTCTCAAGGCTGATCCTGCTTCACGAACTCGACATTAGCAACAACCGATTCGTGGGCTATTTCCCCGAAGTCGTTGTGAGGATTCCTAATTTGAAATATCTCGATATCAGATACAATGAATTCGAAGGCGAATTGCCTCCTGCACTTTTCACTAAGAAACTCGATGTGATTTTAATCAACAACAATCGATTCACCTCCTACATTCCAGAAAATTTTGGGGACTCGCCAGCATCCGTGATTGTGATCGCCAACAACAATTTCACGGGCTGCATTCCCAAAAGTATTGGAAAAATGGGGAACACATTGAACCAACTTATAATGTTGAACAATGGACTTTCGGGTTGTTTTCCTGCTGAGATTGGACTGCTTGGAAATGCGACGGTTATCGATGTTTCATCCAATAAATTGAGTGGGATATTGCCAAAGAGCTTCGATGGGTTGAAGAACGCCGAGGTTATCGATATTTCTTCGAATTTTTTGACTGGGGTTGTGCAGGAGGGACTGTGTAATTTGCCCAAATTGGGTAATTTCACATTCTCTTTCAATTACTTCAACGGTGAGGCGGATAGATGCATGCCGCAGAAGAGAACGGATGTTTCGTTTGATGATGCTGACAATTGCTTGCCAGAGAGGCCCAAGCAGAAGGCGGCCGAGACTTGTGGTTCGGTGATTAGCAAGAGCGTTGATTGCAGTAAGGATATGTGCAGCGGAGGATCACCATCGCCATCACCATCTAAGCCACAACCACCTAAGGAGGGGGTTCCTATAGTGGAGGCACCAAAATCATCGGCACCAGTTCCAGAGCCTAAAAGTCCAGAAACTCCTTCACCTTCCGTTGATGATTCTCATGATCGATCACCAGTCCCAAGATACCGTCCTCCTCCTCCACCTGTAGTGTCCTCCCCACCACCAACGGTTTCGTCACCACCACCACCGGTTCACTCTCCTCCTCCACCGGTTTCATCACCCCCACCACCGATTCACTCTCCTCCTCCACCGGTTTCTTCACCCCCACCACCCGTTCACTCTCCTCCACCACCGGTTTTATCACCCCCACCATCGGTTCACTCTCCACCACCACCGGTTTTATCACCCCCACCACCGGTTCACTCTCCACCACCACCAGTTTTTTCACCTCCACCACCGGTCTACTCACCACCACCACCACCGGTTCACTCTCCTCCACCACCGGTTTTCTCACCCCCACCACCACCGGTCTATTCACCCCCACCACCAGTGCACTCACCTCCCCCTCCAATCCACTCACCACCGCCTCCAATCCAATCTCCTCCACCTCCAGTATTCTCTCCACCGCCTCCAATCCAATCTCCTCCACCTCCAGTATTCTCTCCACCACCACCTTCCCCATCTCCATCTCCTCCTCCTCCGGTTACCTCTCCACCGCCTCCACTAGAAGACATCATCCTTCCACCAAACTTGGGCTTCCAATACTCATCACCGCCTCCACCCATATTTCCGGGCTACTAA 1959 50.69 MKGLGCCLFVSLLLLSSFTFFSSALSNAEASLIARRQLLTLHENDDLPDDYESTIQVKETFSSPRLRRAFIALQAWKKAIYSDPSNVTANWVGADVCSYTGVFCAPALDDKKIEVVAGIDLNHADIAGYLPVELGLLTDIALFHINTNRFCGIVPSSFSRLILLHELDISNNRFVGYFPEVVVRIPNLKYLDIRYNEFEGELPPALFTKKLDVILINNNRFTSYIPENFGDSPASVIVIANNNFTGCIPKSIGKMGNTLNQLIMLNNGLSGCFPAEIGLLGNATVIDVSSNKLSGILPKSFDGLKNAEVIDISSNFLTGVVQEGLCNLPKLGNFTFSFNYFNGEADRCMPQKRTDVSFDDADNCLPERPKQKAAETCGSVISKSVDCSKDMCSGGSPSPSPSKPQPPKEGVPIVEAPKSSAPVPEPKSPETPSPSVDDSHDRSPVPRYRPPPPPVVSSPPPTVSSPPPPVHSPPPPVSSPPPPIHSPPPPVSSPPPPVHSPPPPVLSPPPSVHSPPPPVLSPPPPVHSPPPPVFSPPPPVYSPPPPPVHSPPPPVFSPPPPPVYSPPPPVHSPPPPIHSPPPPIQSPPPPVFSPPPPIQSPPPPVFSPPPPSPSPSPPPPVTSPPPPLEDIILPPNLGFQYSSPPPPIFPGY 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12624701 12626659 + Lag0000681.1 Lac4g0561 604093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g0561 652 PRINTS Proline rich extensin signature 395 407 - -
Lac4g0561 652 PRINTS Proline rich extensin signature 439 455 - -
Lac4g0561 652 PRINTS Proline rich extensin signature 476 501 - -
Lac4g0561 652 PRINTS Proline rich extensin signature 456 473 - -
Lac4g0561 652 PRINTS Proline rich extensin signature 408 429 - -
Lac4g0561 652 Pfam Leucine rich repeat N-terminal domain 72 104 IPR013210 -
Lac4g0561 652 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 9 649 IPR051582 -
Lac4g0561 652 MobiDBLite consensus disorder prediction 388 652 - -
Lac4g0561 652 Gene3D Ribonuclease Inhibitor 70 368 IPR032675 -
Lac4g0561 652 Pfam Leucine rich repeat 284 339 IPR001611 GO:0005515(InterPro)
Lac4g0561 652 MobiDBLite consensus disorder prediction 446 632 - -
Lac4g0561 652 FunFam Leucine-rich repeat extensin-like protein 1 70 231 - -
Lac4g0561 652 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515(InterPro)
Lac4g0561 652 SUPERFAMILY L domain-like 71 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0736 Lac-Chr12:7686269 Lac4g0561 Lac-Chr4:12624701 1.40E-40 dispersed
Lac12g1666 Lac-Chr12:32195417 Lac4g0561 Lac-Chr4:12624701 3.30E-06 dispersed
Lac2g0271 Lac-Chr2:2041419 Lac4g0561 Lac-Chr4:12624701 9.20E-07 dispersed
Lac3g0886 Lac-Chr3:7152776 Lac4g0561 Lac-Chr4:12624701 4.70E-43 dispersed
Lac3g0975 Lac-Chr3:7943378 Lac4g0561 Lac-Chr4:12624701 1.80E-24 dispersed
Lac4g0561 Lac-Chr4:12624701 Lac6g2988 Lac-Chr6:47471664 2.90E-40 dispersed
Lac4g0561 Lac-Chr4:12624701 Lac2g0269 Lac-Chr2:2033572 1.60E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g0561 - - - 0.0