Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g0593 ATGGCTTCTAGGCTCCTTCCCATTGGTAACCAAAAGTTCGATACCACGTGGTACGATGCTCGTGCCACCTTCTACGGCGACATGAGAGGTGGCGAAACTATGGAGGGAGCTTGCGGGTACAGAAACCTATTCGAGCAAGGGTATGGTCTGGCAACAGCAGCGCTAAGCACAGCGCTGTTCAACGAAGGCGGAGCCTGCGGAGCCTGCTTCGAGATAATGTGCGTGAACGACAAAAGCCAATGGTGCATACCAAACGCAGGCACCATCAAAATAACAGCCACAAACTTCTGCCCACCAAACTACACAAAAACATATGACATTTGGTGCAACCCACCACAGCGCCACTTCGACCTCTCCCTCTACATGTTCTCCAAAATCGCCCCTTACAGGGCGGGCGTCGTCTCCATCCGCTACCGTAGGACAGTCTGCCACAAAATGGGCGGCATCAGGTTCGAGCTCAGCGGGAACCCCTACTGGCTGCTGGTCTTGCCCTACAACGTCGGTGGCGCTGGCGACGTTGTTGATATGAAAATTAGAGGGTCTGGAGGGCTTGGTTGGCTTCAGATGTCCAGGAACTGGGGCCAGCATTGGCAGGTTAGTAAGATGTTGGTGGGGCAGAGCTTGTCTTTTCAAGTCGCTACTAGTGATGGGAAGGTCGTTGTGTTTGATAATGTTGTGCCGAGCTCTTGGCAGTTCGGACAGGCCTTTGATGGGAAGTATAATTTTTAG 729 52.81 MASRLLPIGNQKFDTTWYDARATFYGDMRGGETMEGACGYRNLFEQGYGLATAALSTALFNEGGACGACFEIMCVNDKSQWCIPNAGTIKITATNFCPPNYTKTYDIWCNPPQRHFDLSLYMFSKIAPYRAGVVSIRYRRTVCHKMGGIRFELSGNPYWLLVLPYNVGGAGDVVDMKIRGSGGLGWLQMSRNWGQHWQVSKMLVGQSLSFQVATSDGKVVVFDNVVPSSWQFGQAFDGKYNF 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13818684 13820571 - Lag0000713.1 Lac4g0593 604125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g0593 242 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 238 IPR007117 -
Lac4g0593 242 PANTHER EXPANSIN-A15 16 239 IPR002963 GO:0009664(InterPro)
Lac4g0593 242 CDD DPBB_EXPA_N 17 143 - -
Lac4g0593 242 Gene3D - 148 242 IPR036749 -
Lac4g0593 242 Gene3D - 8 144 IPR036908 -
Lac4g0593 242 PRINTS Expansin signature 47 61 IPR002963 GO:0009664(InterPro)
Lac4g0593 242 PRINTS Expansin signature 224 240 IPR002963 GO:0009664(InterPro)
Lac4g0593 242 PRINTS Expansin signature 89 99 IPR002963 GO:0009664(InterPro)
Lac4g0593 242 PRINTS Expansin signature 159 180 IPR002963 GO:0009664(InterPro)
Lac4g0593 242 PRINTS Expansin signature 195 216 IPR002963 GO:0009664(InterPro)
Lac4g0593 242 PRINTS Expansin signature 123 136 IPR002963 GO:0009664(InterPro)
Lac4g0593 242 PRINTS Expansin signature 75 86 IPR002963 GO:0009664(InterPro)
Lac4g0593 242 PRINTS Expansin signature 147 159 IPR002963 GO:0009664(InterPro)
Lac4g0593 242 PRINTS Expansin signature 106 123 IPR002963 GO:0009664(InterPro)
Lac4g0593 242 PRINTS Expansin/Lol pI family signature 34 52 IPR007118 GO:0005576(InterPro)
Lac4g0593 242 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576(InterPro)
Lac4g0593 242 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Lac4g0593 242 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576(InterPro)
Lac4g0593 242 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576(InterPro)
Lac4g0593 242 PRINTS Expansin/Lol pI family signature 16 31 IPR007118 GO:0005576(InterPro)
Lac4g0593 242 SUPERFAMILY PHL pollen allergen 147 237 IPR036749 -
Lac4g0593 242 Pfam Expansin C-terminal domain 149 227 IPR007117 -
Lac4g0593 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 35 148 IPR007112 -
Lac4g0593 242 SMART dpbb_1 52 138 IPR007112 -
Lac4g0593 242 Pfam Lytic transglycolase 52 138 IPR009009 -
Lac4g0593 242 SUPERFAMILY Barwin-like endoglucanases 15 166 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g0593 Lac-Chr4:13818684 Lac8g2527 Lac-Chr8:43068512 2.50E-74 dispersed
Lac4g0593 Lac-Chr4:13818684 Lac4g0594 Lac-Chr4:13865005 2.60E-119 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g0593 - - - 0.0