Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g0594 ATGGCTAATTCCTACAAGAATTGGCTTCTTTTCTTACCTTTTTTGGCCATTTTTGCCCGAGCCATGGCTTCTAGGTTAGCTCCCATTATCGATTATAGAGTCGATAGGACGTGGTATGATGCTCGTGCCACCTTCTACGGTGACATGAGCGGTCGTGAAACTATGCAGGGAGCATGTGGGTATGGAAACCTATTCGAGCAAGGATACGGTCTAGCGACCGCAGCGTTGAGCACAGCGTTGTTTAACGACGGTGGAGCATGCGGAGCATGCTTCGAGATAAAGTGCATGAACAACACAGAACACCAATGGTGCATACCAAACGCAGGCACAATCAAAATAACAGCAACAAACTTCTGCCCACCAAACTACACAAAAACACATGACATTTGGTGCAACCCACCACAGCGTCACTTCGACCTGTCCCTCTACATGTTCACCAAAATGGCCCCTTACCGAGCAGGCGTCATCCCGGTCCGCTACCGTAGGGCATTGTGCTACAAACAAGGCGGCCTCCGGTTCGAGCTCAAAGGGAACCCTTACTGGTTGCTAGTTTTGTTGTTCAATGTTGGTGGTGCTGGTGATGTTGTTGATGTCAAGATTAGAGGCTCTGGTGGAACTGGCTGGCTTCAAATGTCAAGGAATTGGGGCCAAAATTGGCTGGTCAGTACAGTGTTGGTGGGGCAAAGCTTGTCGTTTCAAGTGACTACTAGTGATCGGAGGACGATTGTGTTTGATGATGTTGTGCCGAGCTATTGGAAGTTTGGGCAGACTTTTGAAGGTAAGTATAATTTCTAG 795 48.3 MANSYKNWLLFLPFLAIFARAMASRLAPIIDYRVDRTWYDARATFYGDMSGRETMQGACGYGNLFEQGYGLATAALSTALFNDGGACGACFEIKCMNNTEHQWCIPNAGTIKITATNFCPPNYTKTHDIWCNPPQRHFDLSLYMFTKMAPYRAGVIPVRYRRALCYKQGGLRFELKGNPYWLLVLLFNVGGAGDVVDVKIRGSGGTGWLQMSRNWGQNWLVSTVLVGQSLSFQVTTSDRRTIVFDDVVPSYWKFGQTFEGKYNF 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13865005 13867857 - Lag0000714.1 Lac4g0594 604126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g0594 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 170 IPR007112 -
Lac4g0594 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 260 IPR007117 -
Lac4g0594 264 PRINTS Expansin signature 128 145 IPR002963 GO:0009664(InterPro)
Lac4g0594 264 PRINTS Expansin signature 181 202 IPR002963 GO:0009664(InterPro)
Lac4g0594 264 PRINTS Expansin signature 97 108 IPR002963 GO:0009664(InterPro)
Lac4g0594 264 PRINTS Expansin signature 111 121 IPR002963 GO:0009664(InterPro)
Lac4g0594 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664(InterPro)
Lac4g0594 264 PRINTS Expansin signature 217 238 IPR002963 GO:0009664(InterPro)
Lac4g0594 264 PRINTS Expansin signature 169 181 IPR002963 GO:0009664(InterPro)
Lac4g0594 264 PRINTS Expansin signature 246 262 IPR002963 GO:0009664(InterPro)
Lac4g0594 264 PRINTS Expansin signature 145 158 IPR002963 GO:0009664(InterPro)
Lac4g0594 264 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Lac4g0594 264 Gene3D - 28 165 IPR036908 -
Lac4g0594 264 CDD DPBB_EXPA_N 38 165 - -
Lac4g0594 264 SMART dpbb_1 73 160 IPR007112 -
Lac4g0594 264 PANTHER EXPANSIN-A15 23 261 IPR002963 GO:0009664(InterPro)
Lac4g0594 264 Gene3D - 170 264 IPR036749 -
Lac4g0594 264 SUPERFAMILY Barwin-like endoglucanases 37 188 IPR036908 -
Lac4g0594 264 SUPERFAMILY PHL pollen allergen 167 260 IPR036749 -
Lac4g0594 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576(InterPro)
Lac4g0594 264 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576(InterPro)
Lac4g0594 264 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576(InterPro)
Lac4g0594 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576(InterPro)
Lac4g0594 264 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576(InterPro)
Lac4g0594 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576(InterPro)
Lac4g0594 264 Pfam Lytic transglycolase 73 160 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g0594 Lac-Chr4:13865005 Lac9g2465 Lac-Chr9:43539314 2.60E-77 dispersed
Lac4g0593 Lac-Chr4:13818684 Lac4g0594 Lac-Chr4:13865005 2.60E-119 tandem
Lac4g0594 Lac-Chr4:13865005 Lac4g1158 Lac-Chr4:28439785 7.10E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g0594 - - - 0.0